PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 1NQB

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Mus.musculus	Mo_IGKV1-117*01	95.7	Mo_IGKV1-117*01	100.0	L1	16	L1-16-1	7	RSSQSIvhsngNTYLE	BBABBABBAALBBBBB
A	kappa	Mus.musculus	Mo_IGKV1-117*01	95.7	Mo_IGKV1-117*01	100.0	L2	8	L2-8-1	7	YKVSNRFS	BLEABBBB
A	kappa	Mus.musculus	Mo_IGKV1-117*01	95.7	Mo_IGKV1-117*01	100.0	L3	9	L3-9-cis7-1	10	FQGSHVPYT	BBAABBbBB
A	kappa	Mus.musculus	Mo_IGKV1-117*01	95.7	Mo_IGKV1-117*01	100.0	L4	6	L4-6-1	7	GSGTDF	EBEABB
A	heavy	Mus.musculus	Mo_IGHV1-72*01	98.6	Mo_IGHV1-72*01	100.0	H1	13	H1-13-1	7	KASGYTFTSYWMH	BBBLBBAAABBBB
A	heavy	Mus.musculus	Mo_IGHV1-72*01	98.6	Mo_IGHV1-72*01	100.0	H2	10	H2-10-1	7	RIDPNSGGTK	BBBAAALBBB
A	heavy	Mus.musculus	Mo_IGHV1-72*01	98.6	Mo_IGHV1-72*01	100.0	H3	13	H3-13-*	-1	ARYDYYGSSYFDY	BBBBAALABABAB
A	heavy	Mus.musculus	Mo_IGHV1-72*01	98.6	Mo_IGHV1-72*01	100.0	H4	8	H4-8-1	8	VDKPSSTA	BBAAALBB
C	heavy	Mus.musculus	Mo_IGHV1-72*01	98.6	Mo_IGHV1-72*01	100.0	H1	13	H1-13-1	6	KASGYTFTSYWMH	BBBLBBAAABBBB
C	heavy	Mus.musculus	Mo_IGHV1-72*01	98.6	Mo_IGHV1-72*01	100.0	H2	10	H2-10-1	7	RIDPNSGGTK	BBBAAALBBB
C	heavy	Mus.musculus	Mo_IGHV1-72*01	98.6	Mo_IGHV1-72*01	100.0	H3	13	H3-13-*	-1	ARYDYYGSSYFDY	BBBBABAABABAB
C	heavy	Mus.musculus	Mo_IGHV1-72*01	98.6	Mo_IGHV1-72*01	100.0	H4	8	H4-8-1	9	VDKPSSTA	BBAAALBB
C	kappa	Mus.musculus	Mo_IGKV1-117*01	95.7	Mo_IGKV1-117*01	100.0	L1	16	L1-16-1	5	RSSQSIvhsngNTYLE	BBABBABBAALBBBBB
C	kappa	Mus.musculus	Mo_IGKV1-117*01	95.7	Mo_IGKV1-117*01	100.0	L2	8	L2-8-1	4	YKVSNRFS	BLLABBBB
C	kappa	Mus.musculus	Mo_IGKV1-117*01	95.7	Mo_IGKV1-117*01	100.0	L3	9	L3-9-cis7-1	9	FQGSHVPYT	BBAABBbBB
C	kappa	Mus.musculus	Mo_IGKV1-117*01	95.7	Mo_IGKV1-117*01	100.0	L4	6	L4-6-1	7	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022