PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 1NFD

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
E	lambda	Mus.musculus	Ha_IGLV2*01	100.0	Ha_IGLV2*01	100.0	L1	11	L1-11-4	20	SGDQLPKNFAY	BBAAAAABBBB
E	lambda	Mus.musculus	Ha_IGLV2*01	100.0	Ha_IGLV2*01	100.0	L2	8	L2-8-1	19	YMDNKRPS	BLLLBBBB
E	lambda	Mus.musculus	Ha_IGLV2*01	100.0	Ha_IGLV2*01	100.0	L3	11	L3-11-*	-1	LSSYGDNNDLV	BBBBEAALBBB
E	lambda	Mus.musculus	Ha_IGLV2*01	100.0	Ha_IGLV2*01	100.0	L4	6	L4-6-2	22	TSGTTA	BBEABB
F	heavy	Mus.musculus	Ha_IGHV3S1RNL*01	100.0	Ha_IGHV3S1RNL*01	100.0	H1	13	H1-13-1	19	AASGFTFSDFWMY	BBELEBAAABBBB
F	heavy	Mus.musculus	Ha_IGHV3S1RNL*01	100.0	Ha_IGHV3S1RNL*01	100.0	H2	12	H2-12-1	13	RIKniPNNYATE	BBBBAAALLBBB
F	heavy	Mus.musculus	Ha_IGHV3S1RNL*01	100.0	Ha_IGHV3S1RNL*01	100.0	H3	11	H3-11-*	-1	TRAGRFDHFDY	BBBBAABBLAB
F	heavy	Mus.musculus	Ha_IGHV3S1RNL*01	100.0	Ha_IGHV3S1RNL*01	100.0	H4	8	H4-8-1	26	RDDSRNSI	BBAAALBB
G	lambda	Mus.musculus	Ha_IGLV2*01	100.0	Ha_IGLV2*01	100.0	L1	11	L1-11-4	19	SGDQLPKNFAY	BBAAAAABBBB
G	lambda	Mus.musculus	Ha_IGLV2*01	100.0	Ha_IGLV2*01	100.0	L2	8	L2-8-*	-1	YMDNKRPS	BLLLBBBB
G	lambda	Mus.musculus	Ha_IGLV2*01	100.0	Ha_IGLV2*01	100.0	L3	11	L3-11-*	-1	LSSYGDNNDLV	BBBBEAALBBB
G	lambda	Mus.musculus	Ha_IGLV2*01	100.0	Ha_IGLV2*01	100.0	L4	6	L4-6-2	24	TSGTTA	EBEABB
H	heavy	Mus.musculus	Ha_IGHV3S1RNL*01	100.0	Ha_IGHV3S1RNL*01	100.0	H1	13	H1-13-1	20	AASGFTFSDFWMY	BBBLEBAAABBBB
H	heavy	Mus.musculus	Ha_IGHV3S1RNL*01	100.0	Ha_IGHV3S1RNL*01	100.0	H2	12	H2-12-1	12	RIKniPNNYATE	BBBBAAALLBBB
H	heavy	Mus.musculus	Ha_IGHV3S1RNL*01	100.0	Ha_IGHV3S1RNL*01	100.0	H3	11	H3-11-*	-1	TRAGRFDHFDY	BBBBAABBLAB
H	heavy	Mus.musculus	Ha_IGHV3S1RNL*01	100.0	Ha_IGHV3S1RNL*01	100.0	H4	8	H4-8-1	15	RDDSRNSI	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022