PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 1N8Z

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Mus.musculus.Homo.sapiens	Hu_IGKV1-39*01	98.6	Mo_IGKV6-17*01	81.8	L1	11	L1-11-1	9	RASQDVNTAVA	BBABBAEABBB
A	kappa	Mus.musculus.Homo.sapiens	Hu_IGKV1-39*01	98.6	Mo_IGKV6-17*01	62.5	L2	8	L2-8-1	10	YSASFLYS	BLLABBBB
A	kappa	Mus.musculus.Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	71.4	L3	9	L3-9-cis7-1	8	QQHYTTPPT	BBAABBbBB
A	kappa	Mus.musculus.Homo.sapiens	Hu_IGKV1-39*01	98.6	Hu_IGKV1-39*01	83.3	L4	6	L4-6-2	15	RSGTDF	BBEABB
B	heavy	Mus.musculus.Homo.sapiens	Hu_IGHV3-66*01	94.5	Mo_IGHV14-3*02	84.6	H1	13	H1-13-1	15	AASGFNIKDTYIH	BBBLBBAAABBBB
B	heavy	Mus.musculus.Homo.sapiens	Hu_IGHV3-66*01	94.5	Mo_IGHV14-3*02	60.0	H2	10	H2-10-1	11	RIYPTNGYTR	BBBAAALBBB
B	heavy	Mus.musculus.Homo.sapiens	Hu_IGHV3-66*01	94.5	Hu_IGHV3-66*01	50.0	H3	13	H3-13-*	-1	SRWGGDGFYAMDY	BBABEAABABBAB
B	heavy	Mus.musculus.Homo.sapiens	Hu_IGHV3-66*01	94.5	Hu_IGHV3-66*01	62.5	H4	8	H4-8-1	12	ADTSKNTA	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022