PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 1N4X

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Mus.musculus	Mo_IGHV9-2-1*01	84.9	Mo_IGHV9-2-1*01	76.9	H1	13	H1-13-1	10	KATNYAFTDYSMH	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV9-2-1*01	84.9	Mo_IGHV9-2-1*01	90.0	H2	10	H2-10-1	15	WINTETDEPT	BBBAAALBBB
H	heavy	Mus.musculus	Mo_IGHV9-2-1*01	84.9	Mo_IGHV9-2-1*01	50.0	H3	13	H3-13-*	-1	VRDRHDYGEIFTY	BBBAALALABBAB
H	heavy	Mus.musculus	Mo_IGHV9-2-1*01	84.9	Mo_IGHV9-2-1*01	75.0	H4	8	H4-8-1	8	LDTSTSTA	BBAAALBB
I	heavy	Mus.musculus	Mo_IGHV9-2-1*01	84.9	Mo_IGHV9-2-1*01	76.9	H1	13	H1-13-1	11	KATNYAFTDYSMH	BBBLBBAAABBBB
I	heavy	Mus.musculus	Mo_IGHV9-2-1*01	84.9	Mo_IGHV9-2-1*01	90.0	H2	10	H2-10-1	13	WINTETDEPT	BBBAAALBBB
I	heavy	Mus.musculus	Mo_IGHV9-2-1*01	84.9	Mo_IGHV9-2-1*01	50.0	H3	13	H3-13-*	-1	VRDRHDYGEIFTY	BBBAALALABBAB
I	heavy	Mus.musculus	Mo_IGHV9-2-1*01	84.9	Mo_IGHV9-2-1*01	75.0	H4	8	H4-8-1	8	LDTSTSTA	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV1-117*01	94.2	Mo_IGKV1-117*01	87.5	L1	16	L1-16-1	13	RSSQTIvhnngNTYLE	BBABBBBBAALBBBBB
L	kappa	Mus.musculus	Mo_IGKV1-117*01	94.2	Mo_IGKV1-117*01	100.0	L2	8	L2-8-1	5	YKVSNRFS	BLLABBBB
L	kappa	Mus.musculus	Mo_IGKV1-117*01	94.2	Mo_IGKV1-117*01	85.7	L3	9	L3-9-cis7-1	7	FQGSHFPPT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV1-117*01	94.2	Mo_IGKV1-117*01	100.0	L4	6	L4-6-3	11	GSGTDF	EBAABB
M	kappa	Mus.musculus	Mo_IGKV1-117*01	94.2	Mo_IGKV1-117*01	87.5	L1	16	L1-16-1	11	RSSQTIvhnngNTYLE	BBABBBBBAALBBBBB
M	kappa	Mus.musculus	Mo_IGKV1-117*01	94.2	Mo_IGKV1-117*01	100.0	L2	8	L2-8-1	5	YKVSNRFS	BLEABBBB
M	kappa	Mus.musculus	Mo_IGKV1-117*01	94.2	Mo_IGKV1-117*01	85.7	L3	9	L3-9-cis7-1	7	FQGSHFPPT	BBAABBbBB
M	kappa	Mus.musculus	Mo_IGKV1-117*01	94.2	Mo_IGKV1-117*01	100.0	L4	6	L4-6-1	11	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022