PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 1N0X

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Homo.sapiens	Hu_IGHV1-3*04	87.7	Hu_IGHV1-3*04	46.2	H1	13	H1-13-1	8	QASGYRFSNFVIH	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV1-3*04	87.7	Hu_IGHV1-3*04	60.0	H2	10	H2-10-1	11	WINPYNGNKE	BBBAAALBBB
H	heavy	Homo.sapiens	Hu_IGHV1-3*04	87.7	Hu_IGHV1-3*04	100.0	H3	20	H3-20-*	-1	ARvgpyswDDSPQDNYYMDV
H	heavy	Homo.sapiens	Hu_IGHV1-3*04	87.7	Hu_IGHV1-3*04	75.0	H4	8	H4-8-1	8	ADTSANTA	BBAAALBB
K	heavy	Homo.sapiens	Hu_IGHV1-3*04	87.7	Hu_IGHV1-3*04	46.2	H1	13	H1-13-1	8	QASGYRFSNFVIH	BBBLBBAAABBBB
K	heavy	Homo.sapiens	Hu_IGHV1-3*04	87.7	Hu_IGHV1-3*04	60.0	H2	10	H2-10-1	7	WINPYNGNKE	BBBAAALBBB
K	heavy	Homo.sapiens	Hu_IGHV1-3*04	87.7	Hu_IGHV1-3*04	100.0	H3	20	H3-20-*	-1	ARvgpyswDDSPQDNYYMDV
K	heavy	Homo.sapiens	Hu_IGHV1-3*04	87.7	Hu_IGHV1-3*04	75.0	H4	8	H4-8-1	5	ADTSANTA	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV3-20*01	89.9	Hu_IGKV3-20*01	41.7	L1	12	L1-12-*	-1	RSSHSIRSrRVA	BBABBBAALBBB
L	kappa	Homo.sapiens	Hu_IGKV3-20*01	89.9	Hu_IGKV3-20*01	50.0	L2	8	L2-8-1	6	HGVSNRAS	BLLABBBB
L	kappa	Homo.sapiens	Hu_IGKV3-20*01	89.9	Hu_IGKV3-20*01	57.1	L3	9	L3-9-*	-1	QVYGASSYT	BBBELLBAB
L	kappa	Homo.sapiens	Hu_IGKV3-20*01	89.9	Hu_IGKV3-20*01	100.0	L4	6	L4-6-1	6	GSGTDF	EBEABB
M	kappa	Homo.sapiens	Hu_IGKV3-20*01	89.9	Hu_IGKV3-20*01	41.7	L1	12	L1-12-*	-1	RSSHSIRSrRVA	BBABBBAALBBB
M	kappa	Homo.sapiens	Hu_IGKV3-20*01	89.9	Hu_IGKV3-20*01	50.0	L2	8	L2-8-1	8	HGVSNRAS	BLLABBBB
M	kappa	Homo.sapiens	Hu_IGKV3-20*01	89.9	Hu_IGKV3-20*01	57.1	L3	9	L3-9-*	-1	QVYGASSYT	BBBELLBBB
M	kappa	Homo.sapiens	Hu_IGKV3-20*01	89.9	Hu_IGKV3-20*01	100.0	L4	6	L4-6-1	7	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022