PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 1MHP

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Mus.musculus	Hu_IGHV3-66*01	97.3	Mo_IGHV5-6-5*01	84.6	H1	13	H1-13-1	18	AASGFTFSRYTMS	BBBLBBAAABBBB
H	heavy	Mus.musculus	Hu_IGHV3-66*01	97.3	Mo_IGHV5-6-5*01	66.7	H2	9	H2-9-1	9	TISGGGHTY	BBBAALBBB
H	heavy	Mus.musculus	Hu_IGHV3-66*01	97.3	Hu_IGHV3-66*01	50.0	H3	12	H3-12-*	-1	TRGFGDGGYFDV	BBBBEALABBAB
H	heavy	Mus.musculus	Hu_IGHV3-66*01	97.3	Hu_IGHV3-66*01	100.0	H4	8	H4-8-1	12	RDNSKNTL	BBAAALBB
L	kappa	Mus.musculus	Hu_IGKV1D-13*01	95.6	Mo_IGKV4-68*01	70.0	L1	10	L1-10-1	10	SASSSVNHMF	BBABBBABBB
L	kappa	Mus.musculus	Hu_IGKV1D-13*01	95.6	Mo_IGKV4-68*01	100.0	L2	8	L2-8-*	-1	YLTSNLAS	BLEABBBA
L	kappa	Mus.musculus	Hu_IGKV1D-13*01	95.6	Hu_IGKV1D-13*01	42.9	L3	9	L3-9-cis7-1	11	QQWSGNPWT	BBAABBbBB
L	kappa	Mus.musculus	Hu_IGKV1D-13*01	95.6	Hu_IGKV1D-13*01	83.3	L4	6	L4-6-1	11	GSGTDY	EBEABB
X	heavy	Mus.musculus	Hu_IGHV3-66*01	97.3	Mo_IGHV5-6-5*01	84.6	H1	13	H1-13-1	21	AASGFTFSRYTMS	BBBLEBAAABBBB
X	heavy	Mus.musculus	Hu_IGHV3-66*01	97.3	Mo_IGHV5-6-5*01	66.7	H2	9	H2-9-1	9	TISGGGHTY	BBBAALBBB
X	heavy	Mus.musculus	Hu_IGHV3-66*01	97.3	Hu_IGHV3-66*01	50.0	H3	12	H3-12-*	-1	TRGFGDGGYFDV	BBBBEALABBAB
X	heavy	Mus.musculus	Hu_IGHV3-66*01	97.3	Hu_IGHV3-66*01	100.0	H4	8	H4-8-1	9	RDNSKNTL	BBAAALBB
Y	kappa	Mus.musculus	Hu_IGKV1D-13*01	95.6	Mo_IGKV4-68*01	70.0	L1	10	L1-10-1	9	SASSSVNHMF	BBABBBABBB
Y	kappa	Mus.musculus	Hu_IGKV1D-13*01	95.6	Mo_IGKV4-68*01	100.0	L2	8	L2-8-*	-1	YLTSNLAS	BLEABBBA
Y	kappa	Mus.musculus	Hu_IGKV1D-13*01	95.6	Hu_IGKV1D-13*01	42.9	L3	9	L3-9-cis7-1	11	QQWSGNPWT	BBAABBbBB
Y	kappa	Mus.musculus	Hu_IGKV1D-13*01	95.6	Hu_IGKV1D-13*01	83.3	L4	6	L4-6-1	11	GSGTDY	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022