PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 1MF2

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	84.6	H1	13	H1-13-1	11	AASGFTFMRFGMH	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	100.0	H2	10	H2-10-2	9	YISSGSSTIY	BBBAALABBB
H	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	100.0	H3	18	H3-18-*	-1	ARSggieRYDGTYYVMDY
H	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	100.0	H4	8	H4-8-1	10	RDNPKNTL	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV3-2*01	95.7	Mo_IGKV3-2*01	86.7	L1	15	L1-15-*	-1	RASESVdyygKSFMN	BBABBABBEABBABB
L	kappa	Mus.musculus	Mo_IGKV3-2*01	95.7	Mo_IGKV3-2*01	100.0	L2	8	L2-8-1	7	YAASNQGS	BLLABBBB
L	kappa	Mus.musculus	Mo_IGKV3-2*01	95.7	Mo_IGKV3-2*01	100.0	L3	9	L3-9-cis7-1	14	QQSKEVPWT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV3-2*01	95.7	Mo_IGKV3-2*01	100.0	L4	6	L4-6-1	10	GSGTDF	EBEABB
M	kappa	Mus.musculus	Mo_IGKV3-2*01	95.7	Mo_IGKV3-2*01	86.7	L1	15	L1-15-*	-1	RASESVdyygKSFMN	BBABBABBEABBABB
M	kappa	Mus.musculus	Mo_IGKV3-2*01	95.7	Mo_IGKV3-2*01	100.0	L2	8	L2-8-1	9	YAASNQGS	BLLABBBB
M	kappa	Mus.musculus	Mo_IGKV3-2*01	95.7	Mo_IGKV3-2*01	100.0	L3	9	L3-9-cis7-1	15	QQSKEVPWT	BBAABBbBB
M	kappa	Mus.musculus	Mo_IGKV3-2*01	95.7	Mo_IGKV3-2*01	100.0	L4	6	L4-6-1	14	GSGTDF	EBEABB
N	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	84.6	H1	13	H1-13-1	12	AASGFTFMRFGMH	BBBLBBAAABBBB
N	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	100.0	H2	10	H2-10-2	9	YISSGSSTIY	BBBAALABBB
N	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	100.0	H3	18	H3-18-*	-1	ARSggieRYDGTYYVMDY
N	heavy	Mus.musculus	Mo_IGHV5-17*02	98.6	Mo_IGHV5-17*02	100.0	H4	8	H4-8-1	10	RDNPKNTL	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022