PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 1LO3

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Mus.musculus	Mo_IGHV5-6-5*01	94.5	Mo_IGHV5-6-5*01	69.2	H1	13	H1-13-1	15	AASGFSFRNYGMS	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV5-6-5*01	94.5	Mo_IGHV5-6-5*01	66.7	H2	9	H2-9-1	11	SISYGGLIY	BBBAALBBB
H	heavy	Mus.musculus	Mo_IGHV5-6-5*01	94.5	Mo_IGHV5-6-5*01	50.0	H3	12	H3-12-*	-1	IRGDSFLVWFTF	BBBBBLABABAB
H	heavy	Mus.musculus	Mo_IGHV5-6-5*01	94.5	Mo_IGHV5-6-5*01	75.0	H4	8	H4-8-1	11	RDIAQNIL	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV1-117*01	94.2	Mo_IGKV1-117*01	81.2	L1	16	L1-16-1	15	TSSQTIvhtngNTYLE	BBABBBBBAALBBBBB
L	kappa	Mus.musculus	Mo_IGKV1-117*01	94.2	Mo_IGKV1-117*01	100.0	L2	8	L2-8-1	8	YKVSNRFS	BLEABBBB
L	kappa	Mus.musculus	Mo_IGKV1-117*01	94.2	Mo_IGKV1-117*01	85.7	L3	9	L3-9-cis7-1	8	FQGSHFPLA	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV1-117*01	94.2	Mo_IGKV1-117*01	100.0	L4	6	L4-6-1	12	GSGTDF	EBEABB
X	kappa	Mus.musculus	Mo_IGKV1-117*01	94.2	Mo_IGKV1-117*01	81.2	L1	16	L1-16-1	14	TSSQTIvhtngNTYLE	BBABBBBBAALBBBBB
X	kappa	Mus.musculus	Mo_IGKV1-117*01	94.2	Mo_IGKV1-117*01	100.0	L2	8	L2-8-1	9	YKVSNRFS	BLEABBBB
X	kappa	Mus.musculus	Mo_IGKV1-117*01	94.2	Mo_IGKV1-117*01	85.7	L3	9	L3-9-cis7-1	7	FQGSHFPLA	BBAABBbBB
X	kappa	Mus.musculus	Mo_IGKV1-117*01	94.2	Mo_IGKV1-117*01	100.0	L4	6	L4-6-1	11	GSGTDF	EBEABB
Y	heavy	Mus.musculus	Mo_IGHV5-6-5*01	94.5	Mo_IGHV5-6-5*01	69.2	H1	13	H1-13-1	15	AASGFSFRNYGMS	BBBLBBAAABBBB
Y	heavy	Mus.musculus	Mo_IGHV5-6-5*01	94.5	Mo_IGHV5-6-5*01	66.7	H2	9	H2-9-1	10	SISYGGLIY	BBBAALBBB
Y	heavy	Mus.musculus	Mo_IGHV5-6-5*01	94.5	Mo_IGHV5-6-5*01	50.0	H3	12	H3-12-*	-1	IRGDSFLVWFTF	BBBBBLABABAB
Y	heavy	Mus.musculus	Mo_IGHV5-6-5*01	94.5	Mo_IGHV5-6-5*01	75.0	H4	8	H4-8-1	12	RDIAQNIL	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022