PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 1LMK

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Mus.musculus	Mo_IGKV1-110*01	92.8	Mo_IGKV1-110*01	93.8	L1	16	L1-16-1	9	RSSQSLvhsngNTSLH	BBABBABBAALBBBBB
A	kappa	Mus.musculus	Mo_IGKV1-110*01	92.8	Mo_IGKV1-110*01	87.5	L2	8	L2-8-1	8	YKVSTRFS	BLLABBBB
A	kappa	Mus.musculus	Mo_IGKV1-110*01	92.8	Mo_IGKV1-110*01	100.0	L3	9	L3-9-cis7-1	13	SQSTHVPFT	BBAABBbBB
A	kappa	Mus.musculus	Mo_IGKV1-110*01	92.8	Mo_IGKV1-110*01	100.0	L4	6	L4-6-1	18	GSGTDF	EBEABB
A	heavy	Mus.musculus	Mo_IGHV1-9*01	88.9	Mo_IGHV1-9*01	69.2	H1	13	H1-13-1	13	KTTGYIFSNYWIE	BBBLBBAAABBBB
A	heavy	Mus.musculus	Mo_IGHV1-9*01	88.9	Mo_IGHV1-9*01	60.0	H2	10	H2-10-3	11	KILPGGGSNT	BBBBEALBBB
A	heavy	Mus.musculus	Mo_IGHV1-9*01	88.9	Mo_IGHV1-9*01	100.0	H3	15	H3-15-*	-1	ARGEDYYAYwYVLDY
A	heavy	Mus.musculus	Mo_IGHV1-9*01	88.9	Mo_IGHV1-9*01	87.5	H4	8	H4-8-1	19	ADTSSNIA	BBAAALBB
C	heavy	Mus.musculus	Mo_IGHV1-9*01	88.9	Mo_IGHV1-9*01	69.2	H1	13	H1-13-1	14	KTTGYIFSNYWIE	BBBLBBAAABBBB
C	heavy	Mus.musculus	Mo_IGHV1-9*01	88.9	Mo_IGHV1-9*01	60.0	H2	10	H2-10-*	-1	KILPGGGSNT	BBBBEALBBB
C	heavy	Mus.musculus	Mo_IGHV1-9*01	88.9	Mo_IGHV1-9*01	100.0	H3	15	H3-15-*	-1	ARGEDYYAYwYVLDY
C	heavy	Mus.musculus	Mo_IGHV1-9*01	88.9	Mo_IGHV1-9*01	87.5	H4	8	H4-8-1	19	ADTSSNIA	BBAAALBB
C	kappa	Mus.musculus	Mo_IGKV1-110*01	92.8	Mo_IGKV1-110*01	93.8	L1	16	L1-16-1	9	RSSQSLvhsngNTSLH	BBABBABBAALBBBBB
C	kappa	Mus.musculus	Mo_IGKV1-110*01	92.8	Mo_IGKV1-110*01	87.5	L2	8	L2-8-1	13	YKVSTRFS	BLEABBBB
C	kappa	Mus.musculus	Mo_IGKV1-110*01	92.8	Mo_IGKV1-110*01	100.0	L3	9	L3-9-cis7-1	16	SQSTHVPFT	BBAABBbBB
C	kappa	Mus.musculus	Mo_IGKV1-110*01	92.8	Mo_IGKV1-110*01	100.0	L4	6	L4-6-1	15	GSGTDF	EBEABB
E	heavy	Mus.musculus	Mo_IGHV1-9*01	88.9	Mo_IGHV1-9*01	69.2	H1	13	H1-13-1	15	KTTGYIFSNYWIE	BBBLBBAAABBBB
E	heavy	Mus.musculus	Mo_IGHV1-9*01	88.9	Mo_IGHV1-9*01	60.0	H2	10	H2-10-3	24	KILPGGGSNT	BBBBLALBBB
E	heavy	Mus.musculus	Mo_IGHV1-9*01	88.9	Mo_IGHV1-9*01	100.0	H3	15	H3-15-*	-1	ARGEDYYAYwYVLDY
E	heavy	Mus.musculus	Mo_IGHV1-9*01	88.9	Mo_IGHV1-9*01	87.5	H4	8	H4-8-1	16	ADTSSNIA	BBAAALBB
E	kappa	Mus.musculus	Mo_IGKV1-110*01	92.8	Mo_IGKV1-110*01	93.8	L1	16	L1-16-1	9	RSSQSLvhsngNTSLH	BBABBABBAALBBBBB
E	kappa	Mus.musculus	Mo_IGKV1-110*01	92.8	Mo_IGKV1-110*01	87.5	L2	8	L2-8-1	14	YKVSTRFS	BLEABBBB
E	kappa	Mus.musculus	Mo_IGKV1-110*01	92.8	Mo_IGKV1-110*01	100.0	L3	9	L3-9-cis7-1	17	SQSTHVPFT	BBAABBbBB
E	kappa	Mus.musculus	Mo_IGKV1-110*01	92.8	Mo_IGKV1-110*01	100.0	L4	6	L4-6-1	11	GSGTDF	EBEABB
G	kappa	Mus.musculus	Mo_IGKV1-110*01	92.8	Mo_IGKV1-110*01	93.8	L1	16	L1-16-1	11	RSSQSLvhsngNTSLH	BBABBABBAALBBBBB
G	kappa	Mus.musculus	Mo_IGKV1-110*01	92.8	Mo_IGKV1-110*01	87.5	L2	8	L2-8-1	11	YKVSTRFS	BLEABBBB
G	kappa	Mus.musculus	Mo_IGKV1-110*01	92.8	Mo_IGKV1-110*01	100.0	L3	9	L3-9-cis7-1	17	SQSTHVPFT	BBAABBbBB
G	kappa	Mus.musculus	Mo_IGKV1-110*01	92.8	Mo_IGKV1-110*01	100.0	L4	6	L4-6-1	13	GSGTDF	EBEABB
G	heavy	Mus.musculus	Mo_IGHV1-9*01	88.9	Mo_IGHV1-9*01	69.2	H1	13	H1-13-1	18	KTTGYIFSNYWIE	BBBLBBAAABBBB
G	heavy	Mus.musculus	Mo_IGHV1-9*01	88.9	Mo_IGHV1-9*01	60.0	H2	10	H2-10-3	13	KILPGGGSNT	BBBBEALBBB
G	heavy	Mus.musculus	Mo_IGHV1-9*01	88.9	Mo_IGHV1-9*01	100.0	H3	15	H3-15-*	-1	ARGEDYYAYwYVLDY
G	heavy	Mus.musculus	Mo_IGHV1-9*01	88.9	Mo_IGHV1-9*01	87.5	H4	8	H4-8-1	18	ADTSSNIA	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022