PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 1KFA

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Mus.musculus	Mo_IGHV5-9-1*01	93.2	Mo_IGHV5-9-1*01	100.0	H1	13	H1-13-1	15	AASGFTFSSYAMS	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV5-9-1*01	93.2	CDRLenMismatch	-1.0	H2	9	H2-9-1	9	TITTRGYTF	BBBAALBBB
H	heavy	Mus.musculus	Mo_IGHV5-9-1*01	93.2	Mo_IGHV5-9-1*01	50.0	H3	14	H3-14-*	-1	TREGLLLDYFTMDY	BBBABAABEBEBAB
H	heavy	Mus.musculus	Mo_IGHV5-9-1*01	93.2	Mo_IGHV5-9-1*01	87.5	H4	8	H4-8-1	10	RDNARNTL	BBAAALBB
I	heavy	Mus.musculus	Mo_IGHV5-9-1*01	93.2	Mo_IGHV5-9-1*01	100.0	H1	13	H1-13-1	12	AASGFTFSSYAMS	BBBLBBAAABBBB
I	heavy	Mus.musculus	Mo_IGHV5-9-1*01	93.2	CDRLenMismatch	-1.0	H2	9	H2-9-1	8	TITTRGYTF	BBBAALBBB
I	heavy	Mus.musculus	Mo_IGHV5-9-1*01	93.2	Mo_IGHV5-9-1*01	50.0	H3	14	H3-14-*	-1	TREGLLLDYFTMDY	BBBABAABEBEBAB
I	heavy	Mus.musculus	Mo_IGHV5-9-1*01	93.2	Mo_IGHV5-9-1*01	87.5	H4	8	H4-8-1	12	RDNARNTL	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV1-110*01	97.1	Mo_IGKV1-110*01	100.0	L1	16	L1-16-1	8	RSSQSLvhsngNTYLH	BBABBABBAALBBBBB
L	kappa	Mus.musculus	Mo_IGKV1-110*01	97.1	Mo_IGKV1-110*01	87.5	L2	8	L2-8-1	19	YKVSSRFS	BLEABBBB
L	kappa	Mus.musculus	Mo_IGKV1-110*01	97.1	Mo_IGKV1-110*01	100.0	L3	9	L3-9-cis7-1	14	SQSTHVPFT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV1-110*01	97.1	Mo_IGKV1-110*01	100.0	L4	6	L4-6-1	8	GSGTDF	EBEABB
M	kappa	Mus.musculus	Mo_IGKV1-110*01	97.1	Mo_IGKV1-110*01	100.0	L1	16	L1-16-1	10	RSSQSLvhsngNTYLH	BBABBABBAALBBBBB
M	kappa	Mus.musculus	Mo_IGKV1-110*01	97.1	Mo_IGKV1-110*01	87.5	L2	8	L2-8-*	-1	YKVSSRFS	BLEABBBB
M	kappa	Mus.musculus	Mo_IGKV1-110*01	97.1	Mo_IGKV1-110*01	100.0	L3	9	L3-9-cis7-1	14	SQSTHVPFT	BBAABBbBB
M	kappa	Mus.musculus	Mo_IGKV1-110*01	97.1	Mo_IGKV1-110*01	100.0	L4	6	L4-6-1	9	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022