PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 1KEN

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Mus.musculus	Mo_IGHV3-6*01	95.8	Mo_IGHV3-6*01	85.7	H1	14	H1-14-*	-1	YVTGYSITSgYYWT	BBBLBBAAAEEBBB
H	heavy	Mus.musculus	Mo_IGHV3-6*01	95.8	Mo_IGHV3-6*01	100.0	H2	9	H2-9-*	-1	YISYDGSNN	BLBAAEAAE
H	heavy	Mus.musculus	Mo_IGHV3-6*01	95.8	Mo_IGHV3-6*01	50.0	H3	13	H3-13-*	-1	AAFYYDYDFFFDY	BBBAEALABBBBB
H	heavy	Mus.musculus	Mo_IGHV3-6*01	95.8	Mo_IGHV3-6*01	100.0	H4	8	H4-8-*	-1	RDTSKNQF	BAAAALBB
L	kappa	Mus.musculus	Mo_IGKV4-79*01	97.1	Mo_IGKV4-79*01	66.7	L1	12	L1-12-*	-1	SASSTITsSFLY	BBABBBBBAABB
L	kappa	Mus.musculus	Mo_IGKV4-79*01	97.1	Mo_IGKV4-79*01	100.0	L2	8	L2-8-*	-1	YSTSNLAS	BLLABBBA
L	kappa	Mus.musculus	Mo_IGKV4-79*01	97.1	Mo_IGKV4-79*01	50.0	L3	9	L3-9-2	26	HQWETFPRT	BBAABABBB
L	kappa	Mus.musculus	Mo_IGKV4-79*01	97.1	Mo_IGKV4-79*01	100.0	L4	6	L4-6-3	31	GSGTSY	EABABB
T	heavy	Mus.musculus	Mo_IGHV3-6*01	95.8	Mo_IGHV3-6*01	85.7	H1	14	H1-14-*	-1	YVTGYSITSgYYWT	BBBLBBAAAEEBBB
T	heavy	Mus.musculus	Mo_IGHV3-6*01	95.8	Mo_IGHV3-6*01	100.0	H2	9	H2-9-*	-1	YISYDGSNN	BEBAAEAAE
T	heavy	Mus.musculus	Mo_IGHV3-6*01	95.8	Mo_IGHV3-6*01	50.0	H3	13	H3-13-*	-1	AAFYYDYDFFFDY	BBBAEALABBBBB
T	heavy	Mus.musculus	Mo_IGHV3-6*01	95.8	Mo_IGHV3-6*01	100.0	H4	8	H4-8-1	19	RDTSKNQF	BBAAALBB
U	kappa	Mus.musculus	Mo_IGKV4-79*01	97.1	Mo_IGKV4-79*01	66.7	L1	12	L1-12-*	-1	SASSTITsSFLY	BBABBBBAAABB
U	kappa	Mus.musculus	Mo_IGKV4-79*01	97.1	Mo_IGKV4-79*01	100.0	L2	8	L2-8-*	-1	YSTSNLAS	BLLABBBB
U	kappa	Mus.musculus	Mo_IGKV4-79*01	97.1	Mo_IGKV4-79*01	50.0	L3	9	L3-9-2	22	HQWETFPRT	BBAABABBB
U	kappa	Mus.musculus	Mo_IGKV4-79*01	97.1	Mo_IGKV4-79*01	100.0	L4	6	L4-6-3	31	GSGTSY	EABABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022