PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 1KEM

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Mus.musculus	Mo_IGHV7-3*02	95.9	Mo_IGHV7-3*02	84.6	H1	13	H1-13-1	14	ATSGFTFTDYYFN	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV7-3*02	95.9	Mo_IGHV7-3*02	91.7	H2	12	H2-12-1	11	FIRNKakGYTTE	BBBBAAALLBBB
H	heavy	Mus.musculus	Mo_IGHV7-3*02	95.9	Mo_IGHV7-3*02	66.7	H3	10	H3-10-*	-1	ARWGSYAMDY	BBBBAAEBAB
H	heavy	Mus.musculus	Mo_IGHV7-3*02	95.9	Mo_IGHV7-3*02	87.5	H4	8	H4-8-1	13	RDNSQGIL	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV1-117*01	98.6	Mo_IGKV1-117*01	93.8	L1	16	L1-16-1	9	RFSQSIvhsngNTYLE	BBABBABBAALBBBBB
L	kappa	Mus.musculus	Mo_IGKV1-117*01	98.6	Mo_IGKV1-117*01	100.0	L2	8	L2-8-1	7	YKVSNRFS	BLLABBBB
L	kappa	Mus.musculus	Mo_IGKV1-117*01	98.6	Mo_IGKV1-117*01	100.0	L3	9	L3-9-cis7-1	18	FQGSHVPRT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV1-117*01	98.6	Mo_IGKV1-117*01	100.0	L4	6	L4-6-1	8	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022