PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 1KB5

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Mus.musculus	Mo_IGHV1-39*01	93.2	Mo_IGHV1-39*01	92.3	H1	13	H1-13-1	18	KASGYSFTGYNMN	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV1-39*01	93.2	Mo_IGHV1-39*01	50.0	H2	10	H2-10-1	15	NIDPYYGGIS	BBBAAALBBB
H	heavy	Mus.musculus	Mo_IGHV1-39*01	93.2	Mo_IGHV1-39*01	100.0	H3	12	H3-12-*	-1	ARSRTDLYYFDY	BBBBAABBBBAB
H	heavy	Mus.musculus	Mo_IGHV1-39*01	93.2	Mo_IGHV1-39*01	87.5	H4	8	H4-8-1	11	VDKSSSTA	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV12-44*01	100.0	Mo_IGKV12-44*01	90.9	L1	11	L1-11-*	-1	RASKNIYSYLA	BBABBBAABBB
L	kappa	Mus.musculus	Mo_IGKV12-44*01	100.0	Mo_IGKV12-44*01	87.5	L2	8	L2-8-1	14	YNAKTLGE	BLLABBBB
L	kappa	Mus.musculus	Mo_IGKV12-44*01	100.0	Mo_IGKV12-44*01	100.0	L3	9	L3-9-cis7-2	15	QHHYGTPYT	BBABEBbBB
L	kappa	Mus.musculus	Mo_IGKV12-44*01	100.0	Mo_IGKV12-44*01	100.0	L4	6	L4-6-1	14	GSGTQF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022