PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 1JHK

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Mus.musculus	Mo_IGHV9-4*02	95.9	Mo_IGHV9-4*02	69.2	H1	13	H1-13-*	-1	KASDYsfmTSGMQ
H	heavy	Mus.musculus	Mo_IGHV9-4*02	95.9	Mo_IGHV9-4*02	70.0	H2	10	H2-10-1	13	WLNTQSGVPE	BBBAAALBBB
H	heavy	Mus.musculus	Mo_IGHV9-4*02	95.9	Mo_IGHV9-4*02	50.0	H3	9	H3-9-*	-1	ATWGGNSAY	BBBEEABBB
H	heavy	Mus.musculus	Mo_IGHV9-4*02	95.9	Mo_IGHV9-4*02	87.5	H4	8	H4-8-*	-1	LEtsaTTA
L	kappa	Mus.musculus	Mo_IGKV12-41*01	98.6	Mo_IGKV12-41*01	100.0	L1	11	L1-11-2	6	RASGNIHNYLA	BBABBALLBBB
L	kappa	Mus.musculus	Mo_IGKV12-41*01	98.6	Mo_IGKV12-41*01	100.0	L2	8	L2-8-1	8	YNAKTLAD	BLLABBBB
L	kappa	Mus.musculus	Mo_IGKV12-41*01	98.6	Mo_IGKV12-41*01	85.7	L3	9	L3-9-cis7-1	18	HHFWSTPWT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV12-41*01	98.6	Mo_IGKV12-41*01	100.0	L4	6	L4-6-1	6	GSGTQY	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022