PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 1J05

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Mus.musculus	Mo_IGKV3-5*01	92.8	Mo_IGKV3-5*01	60.0	L1	15	L1-15-1	13	RAGESVDifgvGFLH	BBABBABBLLBBBBB
A	kappa	Mus.musculus	Mo_IGKV3-5*01	92.8	Mo_IGKV3-5*01	100.0	L2	8	L2-8-1	6	YRASNLES	BLLABBBB
A	kappa	Mus.musculus	Mo_IGKV3-5*01	92.8	Mo_IGKV3-5*01	85.7	L3	9	L3-9-cis7-1	7	QQTNEDPYT	BBAABBbBB
A	kappa	Mus.musculus	Mo_IGKV3-5*01	92.8	Mo_IGKV3-5*01	100.0	L4	6	L4-6-3	33	GSRTDF	EAAABB
B	heavy	Mus.musculus	Mo_IGHV14-3*02	95.9	Mo_IGHV14-3*02	100.0	H1	13	H1-13-1	12	TASGFNIKDTYMH	BBBLBBAAABBBB
B	heavy	Mus.musculus	Mo_IGHV14-3*02	95.9	Mo_IGHV14-3*02	90.0	H2	10	H2-10-1	11	RIDPANGNSK	BBBAAALBBB
B	heavy	Mus.musculus	Mo_IGHV14-3*02	95.9	Mo_IGHV14-3*02	50.0	H3	14	H3-14-*	-1	APFGYYVSDYAMAY	BBBBAAABAABBAB
B	heavy	Mus.musculus	Mo_IGHV14-3*02	95.9	Mo_IGHV14-3*02	100.0	H4	8	H4-8-1	6	ADTSSNTA	BBAAALBB
H	heavy	Mus.musculus	Mo_IGHV14-3*02	95.9	Mo_IGHV14-3*02	100.0	H1	13	H1-13-1	12	TASGFNIKDTYMH	BBBLBBAAABBBB
H	heavy	Mus.musculus	Mo_IGHV14-3*02	95.9	Mo_IGHV14-3*02	90.0	H2	10	H2-10-1	11	RIDPANGNSK	BBBAAALBBB
H	heavy	Mus.musculus	Mo_IGHV14-3*02	95.9	Mo_IGHV14-3*02	50.0	H3	14	H3-14-*	-1	APFGYYVSDYAMAY	BBBEAAABAABBAB
H	heavy	Mus.musculus	Mo_IGHV14-3*02	95.9	Mo_IGHV14-3*02	100.0	H4	8	H4-8-1	6	ADTSSNTA	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV3-5*01	92.8	Mo_IGKV3-5*01	60.0	L1	15	L1-15-1	11	RAGESVDifgvGFLH	BBABBABBLLBBBBB
L	kappa	Mus.musculus	Mo_IGKV3-5*01	92.8	Mo_IGKV3-5*01	100.0	L2	8	L2-8-1	6	YRASNLES	BLLABBBB
L	kappa	Mus.musculus	Mo_IGKV3-5*01	92.8	Mo_IGKV3-5*01	85.7	L3	9	L3-9-cis7-1	7	QQTNEDPYT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV3-5*01	92.8	Mo_IGKV3-5*01	100.0	L4	6	L4-6-1	11	GSRTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022