PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 1IGJ

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Mus.musculus	Mo_IGKV1-110*01	97.1	Mo_IGKV1-110*01	93.8	L1	16	L1-16-1	17	RSSQSLvhsngNTYLN	BBAEBABBAALBBBBB
A	kappa	Mus.musculus	Mo_IGKV1-110*01	97.1	Mo_IGKV1-110*01	100.0	L2	8	L2-8-1	15	YKVSNRFS	BLLABBBB
A	kappa	Mus.musculus	Mo_IGKV1-110*01	97.1	Mo_IGKV1-110*01	85.7	L3	9	L3-9-cis7-1	12	SQTTHVPPT	BBAABBbBB
A	kappa	Mus.musculus	Mo_IGKV1-110*01	97.1	Mo_IGKV1-110*01	100.0	L4	6	L4-6-1	10	GSGTDF	EBEABB
B	heavy	Mus.musculus	Mo_IGHV1-34*01	94.5	Mo_IGHV1-34*01	69.2	H1	13	H1-13-*	-1	KSSGYIFTDFYMN	BBBEBBLBBBBBB
B	heavy	Mus.musculus	Mo_IGHV1-34*01	94.5	Mo_IGHV1-34*01	50.0	H2	10	H2-10-1	23	YISPYSGVTG	BBBAAALBBB
B	heavy	Mus.musculus	Mo_IGHV1-34*01	94.5	Mo_IGHV1-34*01	50.0	H3	12	H3-12-*	-1	AGSSGNKWAMDY	BBBBEAALBBAB
B	heavy	Mus.musculus	Mo_IGHV1-34*01	94.5	Mo_IGHV1-34*01	100.0	H4	8	H4-8-1	19	VDKSSSTA	BBAAALBB
C	kappa	Mus.musculus	Mo_IGKV1-110*01	97.1	Mo_IGKV1-110*01	93.8	L1	16	L1-16-1	12	RSSQSLvhsngNTYLN	BBABBABBAALBBBBB
C	kappa	Mus.musculus	Mo_IGKV1-110*01	97.1	Mo_IGKV1-110*01	100.0	L2	8	L2-8-1	17	YKVSNRFS	BLLABBBB
C	kappa	Mus.musculus	Mo_IGKV1-110*01	97.1	Mo_IGKV1-110*01	85.7	L3	9	L3-9-cis7-1	18	SQTTHVPPT	BBAABBbBB
C	kappa	Mus.musculus	Mo_IGKV1-110*01	97.1	Mo_IGKV1-110*01	100.0	L4	6	L4-6-1	6	GSGTDF	EBEABB
D	heavy	Mus.musculus	Mo_IGHV1-34*01	94.5	Mo_IGHV1-34*01	69.2	H1	13	H1-13-*	-1	KSSGYIFTDFYMN	BBBLBBABBBBBB
D	heavy	Mus.musculus	Mo_IGHV1-34*01	94.5	Mo_IGHV1-34*01	50.0	H2	10	H2-10-1	21	YISPYSGVTG	BBBAAALBBB
D	heavy	Mus.musculus	Mo_IGHV1-34*01	94.5	Mo_IGHV1-34*01	50.0	H3	12	H3-12-*	-1	AGSSGNKWAMDY	BBBBEAALBBAB
D	heavy	Mus.musculus	Mo_IGHV1-34*01	94.5	Mo_IGHV1-34*01	100.0	H4	8	H4-8-1	23	VDKSSSTA	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022