PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 1HQ4

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Mus.musculus	Mo_IGKV4-79*01	94.2	Mo_IGKV4-79*01	83.3	L1	12	L1-12-1	12	SASSSVSsNYVY	BBABBBBAAABB
A	kappa	Mus.musculus	Mo_IGKV4-79*01	94.2	Mo_IGKV4-79*01	100.0	L2	8	L2-8-1	15	YSTSNLAS	BLLABBBB
A	kappa	Mus.musculus	Mo_IGKV4-79*01	94.2	Mo_IGKV4-79*01	62.5	L3	9	L3-9-cis7-1	18	LQWSSFPYT	BBBABBbBB
A	kappa	Mus.musculus	Mo_IGKV4-79*01	94.2	Mo_IGKV4-79*01	100.0	L4	6	L4-6-1	7	GSGTSY	EBEABB
B	heavy	Mus.musculus	Mo_IGHV3-2*02	100.0	Mo_IGHV3-2*02	92.9	H1	14	H1-14-1	10	TVTGYSITSgYAWN	BBBLEBAAAEEBBB
B	heavy	Mus.musculus	Mo_IGHV3-2*02	100.0	Mo_IGHV3-2*02	66.7	H2	9	H2-9-1	10	YIRYSGDTR	BBBAALBBB
B	heavy	Mus.musculus	Mo_IGHV3-2*02	100.0	Mo_IGHV3-2*02	50.0	H3	9	H3-9-*	-1	AIGYGNSDY	BBEBEABBB
B	heavy	Mus.musculus	Mo_IGHV3-2*02	100.0	Mo_IGHV3-2*02	100.0	H4	8	H4-8-1	16	RDTSKNQF	BBAAALBB
C	kappa	Mus.musculus	Mo_IGKV4-79*01	94.2	Mo_IGKV4-79*01	83.3	L1	12	L1-12-1	12	SASSSVSsNYVY	BBABBBBAAABB
C	kappa	Mus.musculus	Mo_IGKV4-79*01	94.2	Mo_IGKV4-79*01	100.0	L2	8	L2-8-1	14	YSTSNLAS	BLEABBBB
C	kappa	Mus.musculus	Mo_IGKV4-79*01	94.2	Mo_IGKV4-79*01	62.5	L3	9	L3-9-cis7-1	17	LQWSSFPYT	BBBABBbBB
C	kappa	Mus.musculus	Mo_IGKV4-79*01	94.2	Mo_IGKV4-79*01	100.0	L4	6	L4-6-1	8	GSGTSY	EBEABB
D	heavy	Mus.musculus	Mo_IGHV3-2*02	100.0	Mo_IGHV3-2*02	92.9	H1	14	H1-14-1	9	TVTGYSITSgYAWN	BBBLBBAAAEEBBB
D	heavy	Mus.musculus	Mo_IGHV3-2*02	100.0	Mo_IGHV3-2*02	66.7	H2	9	H2-9-1	10	YIRYSGDTR	BBBAALBBB
D	heavy	Mus.musculus	Mo_IGHV3-2*02	100.0	Mo_IGHV3-2*02	50.0	H3	9	H3-9-*	-1	AIGYGNSDY	BBEBEABBB
D	heavy	Mus.musculus	Mo_IGHV3-2*02	100.0	Mo_IGHV3-2*02	100.0	H4	8	H4-8-1	17	RDTSKNQF	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022