PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 1FSK

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
B	kappa	Mus.musculus	Mo_IGKV6-20*01	91.3	Mo_IGKV6-20*01	81.8	L1	11	L1-11-1	15	KASENVDTYVF	BBABBAEAABB
B	kappa	Mus.musculus	Mo_IGKV6-20*01	91.3	Mo_IGKV6-20*01	87.5	L2	8	L2-8-*	-1	YGPSNRYT	BEBLBBBB
B	kappa	Mus.musculus	Mo_IGKV6-20*01	91.3	Mo_IGKV6-20*01	100.0	L3	9	L3-9-cis7-1	12	GQSYSYPYT	BBAABBbBB
B	kappa	Mus.musculus	Mo_IGKV6-20*01	91.3	Mo_IGKV6-20*01	83.3	L4	6	L4-6-1	11	GSTTDF	EEEABB
C	heavy	Mus.musculus	Mo_IGHV1S70*01	91.8	Mo_IGHV1S70*01	100.0	H1	13	H1-13-1	14	KASGYTFTSYWIN	BBBLBBAAABBBB
C	heavy	Mus.musculus	Mo_IGHV1S70*01	91.8	Mo_IGHV1S70*01	70.0	H2	10	H2-10-3	18	NIFPSDSYTN	BBBBEALBBB
C	heavy	Mus.musculus	Mo_IGHV1S70*01	91.8	Mo_IGHV1S70*01	0.0	H3	11	H3-11-*	-1	TRGARDTWFAY	BBBBBLBBLAB
C	heavy	Mus.musculus	Mo_IGHV1S70*01	91.8	Mo_IGHV1S70*01	100.0	H4	8	H4-8-1	14	VDKSSSTA	BBAAALBB
E	kappa	Mus.musculus	Mo_IGKV6-20*01	91.3	Mo_IGKV6-20*01	81.8	L1	11	L1-11-1	15	KASENVDTYVF	BBABBAEAABB
E	kappa	Mus.musculus	Mo_IGKV6-20*01	91.3	Mo_IGKV6-20*01	87.5	L2	8	L2-8-*	-1	YGPSNRYT	BEBLBBBB
E	kappa	Mus.musculus	Mo_IGKV6-20*01	91.3	Mo_IGKV6-20*01	100.0	L3	9	L3-9-cis7-1	12	GQSYSYPYT	BBAABBbBB
E	kappa	Mus.musculus	Mo_IGKV6-20*01	91.3	Mo_IGKV6-20*01	83.3	L4	6	L4-6-1	11	GSTTDF	EEEABB
F	heavy	Mus.musculus	Mo_IGHV1S70*01	91.8	Mo_IGHV1S70*01	100.0	H1	13	H1-13-1	14	KASGYTFTSYWIN	BBBLBBAAABBBB
F	heavy	Mus.musculus	Mo_IGHV1S70*01	91.8	Mo_IGHV1S70*01	70.0	H2	10	H2-10-3	18	NIFPSDSYTN	BBBBEALBBB
F	heavy	Mus.musculus	Mo_IGHV1S70*01	91.8	Mo_IGHV1S70*01	0.0	H3	11	H3-11-*	-1	TRGARDTWFAY	BBBBBLBBLAB
F	heavy	Mus.musculus	Mo_IGHV1S70*01	91.8	Mo_IGHV1S70*01	100.0	H4	8	H4-8-1	14	VDKSSSTA	BBAAALBB
H	kappa	Mus.musculus	Mo_IGKV6-20*01	91.3	Mo_IGKV6-20*01	81.8	L1	11	L1-11-1	15	KASENVDTYVF	BBABBAEAABB
H	kappa	Mus.musculus	Mo_IGKV6-20*01	91.3	Mo_IGKV6-20*01	87.5	L2	8	L2-8-*	-1	YGPSNRYT	BEBLBBBB
H	kappa	Mus.musculus	Mo_IGKV6-20*01	91.3	Mo_IGKV6-20*01	100.0	L3	9	L3-9-cis7-1	12	GQSYSYPYT	BBAABBbBB
H	kappa	Mus.musculus	Mo_IGKV6-20*01	91.3	Mo_IGKV6-20*01	83.3	L4	6	L4-6-1	11	GSTTDF	EEEABB
I	heavy	Mus.musculus	Mo_IGHV1S70*01	91.8	Mo_IGHV1S70*01	100.0	H1	13	H1-13-1	14	KASGYTFTSYWIN	BBBLBBAAABBBB
I	heavy	Mus.musculus	Mo_IGHV1S70*01	91.8	Mo_IGHV1S70*01	70.0	H2	10	H2-10-3	18	NIFPSDSYTN	BBBBEALBBB
I	heavy	Mus.musculus	Mo_IGHV1S70*01	91.8	Mo_IGHV1S70*01	0.0	H3	11	H3-11-*	-1	TRGARDTWFAY	BBBBBLBBLAB
I	heavy	Mus.musculus	Mo_IGHV1S70*01	91.8	Mo_IGHV1S70*01	100.0	H4	8	H4-8-1	14	VDKSSSTA	BBAAALBB
K	kappa	Mus.musculus	Mo_IGKV6-20*01	91.3	Mo_IGKV6-20*01	81.8	L1	11	L1-11-1	15	KASENVDTYVF	BBABBAEAABB
K	kappa	Mus.musculus	Mo_IGKV6-20*01	91.3	Mo_IGKV6-20*01	87.5	L2	8	L2-8-*	-1	YGPSNRYT	BEBLBBBB
K	kappa	Mus.musculus	Mo_IGKV6-20*01	91.3	Mo_IGKV6-20*01	100.0	L3	9	L3-9-cis7-1	12	GQSYSYPYT	BBAABBbBB
K	kappa	Mus.musculus	Mo_IGKV6-20*01	91.3	Mo_IGKV6-20*01	83.3	L4	6	L4-6-1	11	GSTTDF	EEEABB
L	heavy	Mus.musculus	Mo_IGHV1S70*01	91.8	Mo_IGHV1S70*01	100.0	H1	13	H1-13-1	14	KASGYTFTSYWIN	BBBLBBAAABBBB
L	heavy	Mus.musculus	Mo_IGHV1S70*01	91.8	Mo_IGHV1S70*01	70.0	H2	10	H2-10-3	18	NIFPSDSYTN	BBBBEALBBB
L	heavy	Mus.musculus	Mo_IGHV1S70*01	91.8	Mo_IGHV1S70*01	0.0	H3	11	H3-11-*	-1	TRGARDTWFAY	BBBBBLBBLAB
L	heavy	Mus.musculus	Mo_IGHV1S70*01	91.8	Mo_IGHV1S70*01	100.0	H4	8	H4-8-1	14	VDKSSSTA	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022