PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 1FN4

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Rattus.norvegicus	Ra_IGKV22S2*01	94.2	Ra_IGKV22S2*01	81.8	L1	11	L1-11-*	-1	KGSQNINNYLA
A	kappa	Rattus.norvegicus	Ra_IGKV22S2*01	94.2	Ra_IGKV22S2*01	87.5	L2	8	L2-8-*	-1	YNTNSLQT	BBLBBBBA
A	kappa	Rattus.norvegicus	Ra_IGKV22S2*01	94.2	Ra_IGKV22S2*01	28.6	L3	8	L3-8-*	-1	YQYNNGYT	BBAAAALB
A	kappa	Rattus.norvegicus	Ra_IGKV22S2*01	94.2	Ra_IGKV22S2*01	83.3	L4	6	L4-6-*	-1	GSGTDY	EBBEBB
B	heavy	Rattus.norvegicus	Ra_IGHV2-63*01	91.8	Ra_IGHV2-63*01	76.9	H1	13	H1-13-1	27	TVSGFSLTSFSVS	BBBLBBAAABBBB
B	heavy	Rattus.norvegicus	Ra_IGHV2-63*01	91.8	Ra_IGHV2-63*01	55.6	H2	9	H2-9-1	21	RMWYDGYTA	BBBAALBBB
B	heavy	Rattus.norvegicus	Ra_IGHV2-63*01	91.8	Ra_IGHV2-63*01	100.0	H3	17	H3-17-*	-1	TRDLYGGYplgFWYFDF
B	heavy	Rattus.norvegicus	Ra_IGHV2-63*01	91.8	Ra_IGHV2-63*01	100.0	H4	8	H4-8-1	22	RDTSKNQV	BBAAALBB
C	kappa	Rattus.norvegicus	Ra_IGKV22S2*01	94.2	Ra_IGKV22S2*01	81.8	L1	11	L1-11-2	18	KGSQNINNYLA	BBABBALLBBB
C	kappa	Rattus.norvegicus	Ra_IGKV22S2*01	94.2	Ra_IGKV22S2*01	87.5	L2	8	L2-8-*	-1	YNTNSLQT	BLLABBBA
C	kappa	Rattus.norvegicus	Ra_IGKV22S2*01	94.2	Ra_IGKV22S2*01	28.6	L3	8	L3-8-*	-1	YQYNNGYT	BBAAAALB
C	kappa	Rattus.norvegicus	Ra_IGKV22S2*01	94.2	Ra_IGKV22S2*01	83.3	L4	6	L4-6-*	-1	GSGTDY	EBBEBB
D	heavy	Rattus.norvegicus	Ra_IGHV2-63*01	91.8	Ra_IGHV2-63*01	76.9	H1	13	H1-13-1	26	TVSGFSLTSFSVS	BBBLBBAAABBBB
D	heavy	Rattus.norvegicus	Ra_IGHV2-63*01	91.8	Ra_IGHV2-63*01	55.6	H2	9	H2-9-1	20	RMWYDGYTA	BBBAALBBB
D	heavy	Rattus.norvegicus	Ra_IGHV2-63*01	91.8	Ra_IGHV2-63*01	100.0	H3	17	H3-17-*	-1	TRDLYGGYplgFWYFDF
D	heavy	Rattus.norvegicus	Ra_IGHV2-63*01	91.8	Ra_IGHV2-63*01	100.0	H4	8	H4-8-1	25	RDTSKNQV	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022