PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 1FJ1

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Mus.musculus	Mo_IGKV19-93*01	94.2	Mo_IGKV19-93*01	100.0	L1	11	L1-11-2	8	KASQDINKYIA	BBABBALLBBB
A	kappa	Mus.musculus	Mo_IGKV19-93*01	94.2	Mo_IGKV19-93*01	100.0	L2	8	L2-8-1	12	HYTSTLQP	BLLABBBB
A	kappa	Mus.musculus	Mo_IGKV19-93*01	94.2	Mo_IGKV19-93*01	85.7	L3	9	L3-9-2	10	LQYDNLQRT	BBAABABBB
A	kappa	Mus.musculus	Mo_IGKV19-93*01	94.2	Mo_IGKV19-93*01	100.0	L4	6	L4-6-1	9	GSGRDY	EBEABB
B	heavy	Mus.musculus	Mo_IGHV9-2-1*01	93.2	Mo_IGHV9-2-1*01	92.3	H1	13	H1-13-*	-1	KASGYTFTDYSMY	BBBLBBAAABAEB
B	heavy	Mus.musculus	Mo_IGHV9-2-1*01	93.2	Mo_IGHV9-2-1*01	100.0	H2	10	H2-10-1	11	WINTETGEPT	BBBAAALBBB
B	heavy	Mus.musculus	Mo_IGHV9-2-1*01	93.2	Mo_IGHV9-2-1*01	100.0	H3	6	H3-6-*	-1	ARGLDS	BBEAAB
B	heavy	Mus.musculus	Mo_IGHV9-2-1*01	93.2	Mo_IGHV9-2-1*01	87.5	H4	8	H4-8-1	9	LDTSASTA	BBAAALBB
C	kappa	Mus.musculus	Mo_IGKV19-93*01	94.2	Mo_IGKV19-93*01	100.0	L1	11	L1-11-2	8	KASQDINKYIA	BBABBALLBBB
C	kappa	Mus.musculus	Mo_IGKV19-93*01	94.2	Mo_IGKV19-93*01	100.0	L2	8	L2-8-1	12	HYTSTLQP	BLLABBBB
C	kappa	Mus.musculus	Mo_IGKV19-93*01	94.2	Mo_IGKV19-93*01	85.7	L3	9	L3-9-2	10	LQYDNLQRT	BBAABABBB
C	kappa	Mus.musculus	Mo_IGKV19-93*01	94.2	Mo_IGKV19-93*01	100.0	L4	6	L4-6-1	9	GSGRDY	EBEABB
D	heavy	Mus.musculus	Mo_IGHV9-2-1*01	93.2	Mo_IGHV9-2-1*01	92.3	H1	13	H1-13-*	-1	KASGYTFTDYSMY	BBBLBBAAABAEB
D	heavy	Mus.musculus	Mo_IGHV9-2-1*01	93.2	Mo_IGHV9-2-1*01	100.0	H2	10	H2-10-1	11	WINTETGEPT	BBBAAALBBB
D	heavy	Mus.musculus	Mo_IGHV9-2-1*01	93.2	Mo_IGHV9-2-1*01	100.0	H3	6	H3-6-*	-1	ARGLDS	BBEAAB
D	heavy	Mus.musculus	Mo_IGHV9-2-1*01	93.2	Mo_IGHV9-2-1*01	87.5	H4	8	H4-8-1	8	LDTSASTA	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022