PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 1F11

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Mus.musculus	Mo_IGKV3-4*01	98.6	Mo_IGKV3-4*01	100.0	L1	15	L1-15-1	12	KASQSVDydgdSYMN	BBABBABBLLBBBBB
A	kappa	Mus.musculus	Mo_IGKV3-4*01	98.6	Mo_IGKV3-4*01	75.0	L2	8	L2-8-1	10	YVASNLKS	BLEABBBB
A	kappa	Mus.musculus	Mo_IGKV3-4*01	98.6	Mo_IGKV3-4*01	100.0	L3	9	L3-9-cis7-1	10	QQSNEDPFT	BBAABBbBB
A	kappa	Mus.musculus	Mo_IGKV3-4*01	98.6	Mo_IGKV3-4*01	100.0	L4	6	L4-6-1	8	GSGTDF	EBEABB
B	heavy	Mus.musculus	Mo_IGHV1S107*01	100.0	Mo_IGHV1S107*01	84.6	H1	13	H1-13-1	13	KASGYTFTDYYMK	BBBLBBAAABBBB
B	heavy	Mus.musculus	Mo_IGHV1S107*01	100.0	Mo_IGHV1S107*01	90.0	H2	10	H2-10-1	13	DINPNNGGTG	BBBAAALBBB
B	heavy	Mus.musculus	Mo_IGHV1S107*01	100.0	Mo_IGHV1S107*01	0.0	H3	12	H3-12-*	-1	ANDYGSTYGFAY	BBABLLALBBAB
B	heavy	Mus.musculus	Mo_IGHV1S107*01	100.0	Mo_IGHV1S107*01	100.0	H4	8	H4-8-1	10	VDKSSSTA	BBAAALBB
C	kappa	Mus.musculus	Mo_IGKV3-4*01	98.6	Mo_IGKV3-4*01	100.0	L1	15	L1-15-1	11	KASQSVDydgdSYMN	BBABBABBLLBBBBB
C	kappa	Mus.musculus	Mo_IGKV3-4*01	98.6	Mo_IGKV3-4*01	75.0	L2	8	L2-8-1	11	YVASNLKS	BLEABBBB
C	kappa	Mus.musculus	Mo_IGKV3-4*01	98.6	Mo_IGKV3-4*01	100.0	L3	9	L3-9-cis7-1	10	QQSNEDPFT	BBAABBbBB
C	kappa	Mus.musculus	Mo_IGKV3-4*01	98.6	Mo_IGKV3-4*01	100.0	L4	6	L4-6-1	8	GSGTDF	EBEABB
D	heavy	Mus.musculus	Mo_IGHV1S107*01	100.0	Mo_IGHV1S107*01	84.6	H1	13	H1-13-1	13	KASGYTFTDYYMK	BBBLBBAAABBBB
D	heavy	Mus.musculus	Mo_IGHV1S107*01	100.0	Mo_IGHV1S107*01	90.0	H2	10	H2-10-1	13	DINPNNGGTG	BBBAAALBBB
D	heavy	Mus.musculus	Mo_IGHV1S107*01	100.0	Mo_IGHV1S107*01	0.0	H3	12	H3-12-*	-1	ANDYGSTYGFAY	BBABLLALBBAB
D	heavy	Mus.musculus	Mo_IGHV1S107*01	100.0	Mo_IGHV1S107*01	100.0	H4	8	H4-8-1	10	VDKSSSTA	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022