PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 1EK3

#CDRs = 4; #Clusters = 5.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Homo.sapiens	Hu_IGKV4-1*01	98.6	Hu_IGKV4-1*01	58.8	L1	17	L1-17-1	9	KSSQNLldssfdTNTLA	BBABBABBAAALBBBBB
A	kappa	Homo.sapiens	Hu_IGKV4-1*01	98.6	Hu_IGKV4-1*01	87.5	L2	8	L2-8-1	4	YWASSRES	BLLABBBB
A	kappa	Homo.sapiens	Hu_IGKV4-1*01	98.6	Hu_IGKV4-1*01	100.0	L3	9	L3-9-cis7-1	17	QQYYSTPPT	BBAABBbBB
A	kappa	Homo.sapiens	Hu_IGKV4-1*01	98.6	Hu_IGKV4-1*01	100.0	L4	6	L4-6-1	5	GSGTDF	EBEABB
B	kappa	Homo.sapiens	Hu_IGKV4-1*01	98.6	Hu_IGKV4-1*01	58.8	L1	17	L1-17-*	-1	KSSQNLldssfdTNTLA	BBABBABBEABABBBBB
B	kappa	Homo.sapiens	Hu_IGKV4-1*01	98.6	Hu_IGKV4-1*01	87.5	L2	8	L2-8-1	5	YWASSRES	BLLABBBB
B	kappa	Homo.sapiens	Hu_IGKV4-1*01	98.6	Hu_IGKV4-1*01	100.0	L3	9	L3-9-cis7-1	19	QQYYSTPPT	BBAABBbBB
B	kappa	Homo.sapiens	Hu_IGKV4-1*01	98.6	Hu_IGKV4-1*01	100.0	L4	6	L4-6-1	10	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022