PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 1DN0

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Homo.sapiens	Hu_IGKV3D-20*01	98.6	Hu_IGKV3D-20*01	91.7	L1	12	L1-12-2	11	GASQSVSsNYLA	BBABBBBLLBBB
A	kappa	Homo.sapiens	Hu_IGKV3D-20*01	98.6	Hu_IGKV3D-20*01	100.0	L2	8	L2-8-1	4	YDASSRAT	BLLABBBB
A	kappa	Homo.sapiens	Hu_IGKV3D-20*01	98.6	Hu_IGKV3D-20*01	100.0	L3	9	L3-9-cis7-1	7	QQYGSSPLT	BBAABBbBB
A	kappa	Homo.sapiens	Hu_IGKV3D-20*01	98.6	Hu_IGKV3D-20*01	100.0	L4	6	L4-6-1	12	GSGTDF	EBEABB
B	heavy	Homo.sapiens	Hu_IGHV4-34*01	98.6	Hu_IGHV4-34*01	92.3	H1	13	H1-13-*	-1	AVYGGSFSDYYWS	BBBEEBABLBBBB
B	heavy	Homo.sapiens	Hu_IGHV4-34*01	98.6	Hu_IGHV4-34*01	100.0	H2	9	H2-9-1	10	EINHSGSTN	BBBAALBBB
B	heavy	Homo.sapiens	Hu_IGHV4-34*01	98.6	Hu_IGHV4-34*01	100.0	H3	14	H3-14-*	-1	ARPPHDTSGHYWNY	BBBABABBBBBBAB
B	heavy	Homo.sapiens	Hu_IGHV4-34*01	98.6	Hu_IGHV4-34*01	100.0	H4	8	H4-8-1	15	VDTSKNQF	BBAAALBB
C	kappa	Homo.sapiens	Hu_IGKV3D-20*01	98.6	Hu_IGKV3D-20*01	91.7	L1	12	L1-12-2	9	GASQSVSsNYLA	BBABBBBLLBBB
C	kappa	Homo.sapiens	Hu_IGKV3D-20*01	98.6	Hu_IGKV3D-20*01	100.0	L2	8	L2-8-1	5	YDASSRAT	BLLABBBB
C	kappa	Homo.sapiens	Hu_IGKV3D-20*01	98.6	Hu_IGKV3D-20*01	100.0	L3	9	L3-9-cis7-1	7	QQYGSSPLT	BBAABBbBB
C	kappa	Homo.sapiens	Hu_IGKV3D-20*01	98.6	Hu_IGKV3D-20*01	100.0	L4	6	L4-6-1	11	GSGTDF	EBEABB
D	heavy	Homo.sapiens	Hu_IGHV4-34*01	98.6	Hu_IGHV4-34*01	92.3	H1	13	H1-13-*	-1	AVYGGSFSDYYWS	BBBEEBABLBBBB
D	heavy	Homo.sapiens	Hu_IGHV4-34*01	98.6	Hu_IGHV4-34*01	100.0	H2	9	H2-9-1	12	EINHSGSTN	BBBAALBBB
D	heavy	Homo.sapiens	Hu_IGHV4-34*01	98.6	Hu_IGHV4-34*01	100.0	H3	14	H3-14-*	-1	ARPPHDTSGHYWNY	BBBABAABBBBBAB
D	heavy	Homo.sapiens	Hu_IGHV4-34*01	98.6	Hu_IGHV4-34*01	100.0	H4	8	H4-8-1	12	VDTSKNQF	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022