PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 1C5D

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Rattus.norvegicus	Ra_IGKV19S2*01	97.1	Ra_IGKV19S2*01	90.9	L1	11	L1-11-1	10	QASQDINKYIA	BBABBAEABBB
A	kappa	Rattus.norvegicus	Ra_IGKV19S2*01	97.1	Ra_IGKV19S2*01	62.5	L2	8	L2-8-1	9	RYTSILVL	BLEABBBB
A	kappa	Rattus.norvegicus	Ra_IGKV19S2*01	97.1	Ra_IGKV19S2*01	71.4	L3	8	L3-8-1	11	LQYGNLYT	BBAABEBB
A	kappa	Rattus.norvegicus	Ra_IGKV19S2*01	97.1	Ra_IGKV19S2*01	83.3	L4	6	L4-6-1	10	GSGRDF	EBEABB
B	heavy	Rattus.norvegicus	Ra_IGHV2S8*01	91.8	Ra_IGHV2S8*01	76.9	H1	13	H1-13-*	-1	TVSGFPLTTNGVS	BBAABBAAABBBB
B	heavy	Rattus.norvegicus	Ra_IGHV2S8*01	91.8	Ra_IGHV2S8*01	88.9	H2	9	H2-9-1	14	AISSGGSPY	BBBAALBBB
B	heavy	Rattus.norvegicus	Ra_IGHV2S8*01	91.8	Ra_IGHV2S8*01	50.0	H3	11	H3-11-*	-1	TREDGWNYFDY	BBALLABBLAB
B	heavy	Rattus.norvegicus	Ra_IGHV2S8*01	91.8	Ra_IGHV2S8*01	100.0	H4	8	H4-8-1	11	RDTSKSQV	BBAAALBB
H	heavy	Rattus.norvegicus	Ra_IGHV2S8*01	91.8	Ra_IGHV2S8*01	76.9	H1	13	H1-13-*	-1	TVSGFPLTTNGVS	BBBABBAAABBBB
H	heavy	Rattus.norvegicus	Ra_IGHV2S8*01	91.8	Ra_IGHV2S8*01	88.9	H2	9	H2-9-1	14	AISSGGSPY	BBBAALBBB
H	heavy	Rattus.norvegicus	Ra_IGHV2S8*01	91.8	Ra_IGHV2S8*01	50.0	H3	11	H3-11-*	-1	TREDGWNYFDY	BBALLABBLAB
H	heavy	Rattus.norvegicus	Ra_IGHV2S8*01	91.8	Ra_IGHV2S8*01	100.0	H4	8	H4-8-1	16	RDTSKSQV	BBAAALBB
L	kappa	Rattus.norvegicus	Ra_IGKV19S2*01	97.1	Ra_IGKV19S2*01	90.9	L1	11	L1-11-1	7	QASQDINKYIA	BBABBAEABBB
L	kappa	Rattus.norvegicus	Ra_IGKV19S2*01	97.1	Ra_IGKV19S2*01	62.5	L2	8	L2-8-1	10	RYTSILVL	BLLABBBB
L	kappa	Rattus.norvegicus	Ra_IGKV19S2*01	97.1	Ra_IGKV19S2*01	71.4	L3	8	L3-8-1	7	LQYGNLYT	BBAABEBB
L	kappa	Rattus.norvegicus	Ra_IGKV19S2*01	97.1	Ra_IGKV19S2*01	83.3	L4	6	L4-6-1	26	GSGRDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022