PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 1BFO

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Rattus.norvegicus	Ra_IGKV22S7*01	94.2	Ra_IGKV22S7*01	90.9	L1	11	L1-11-1	14	KASQNIDKYLN	BBABBAEABBB
A	kappa	Rattus.norvegicus	Ra_IGKV22S7*01	94.2	Ra_IGKV22S7*01	100.0	L2	8	L2-8-1	17	YNTNNLQT	BLLABBBB
A	kappa	Rattus.norvegicus	Ra_IGKV22S7*01	94.2	Ra_IGKV22S7*01	85.7	L3	9	L3-9-cis7-1	10	LQHISRPRT	BBAABBbBB
A	kappa	Rattus.norvegicus	Ra_IGKV22S7*01	94.2	Ra_IGKV22S7*01	83.3	L4	6	L4-6-1	12	GSGTDF	EBEABB
B	heavy	Rattus.norvegicus	Ra_IGHV7-7*01	100.0	Ra_IGHV7-7*01	92.3	H1	13	H1-13-1	15	AGSGFTFTDFYMN	BBBLBBAAABBBB
B	heavy	Rattus.norvegicus	Ra_IGHV7-7*01	100.0	Ra_IGHV7-7*01	83.3	H2	12	H2-12-1	15	FIRDKakGYTTE	BBBBAAALLBBB
B	heavy	Rattus.norvegicus	Ra_IGHV7-7*01	100.0	Ra_IGHV7-7*01	100.0	H3	12	H3-12-*	-1	AREGHTAAPFDY	BBAEBEBBbLAB
B	heavy	Rattus.norvegicus	Ra_IGHV7-7*01	100.0	Ra_IGHV7-7*01	100.0	H4	8	H4-8-1	21	RDNTQNML	BBAAALBB
C	kappa	Rattus.norvegicus	Ra_IGKV22S7*01	94.2	Ra_IGKV22S7*01	90.9	L1	11	L1-11-1	18	KASQNIDKYLN	BBABBAEABBB
C	kappa	Rattus.norvegicus	Ra_IGKV22S7*01	94.2	Ra_IGKV22S7*01	100.0	L2	8	L2-8-1	19	YNTNNLQT	BLLABBBB
C	kappa	Rattus.norvegicus	Ra_IGKV22S7*01	94.2	Ra_IGKV22S7*01	85.7	L3	9	L3-9-cis7-1	10	LQHISRPRT	BBAABBbBB
C	kappa	Rattus.norvegicus	Ra_IGKV22S7*01	94.2	Ra_IGKV22S7*01	83.3	L4	6	L4-6-1	12	GSGTDF	EBEABB
D	heavy	Rattus.norvegicus	Ra_IGHV7-7*01	100.0	Ra_IGHV7-7*01	92.3	H1	13	H1-13-1	16	AGSGFTFTDFYMN	BBBLBBAAABBBB
D	heavy	Rattus.norvegicus	Ra_IGHV7-7*01	100.0	Ra_IGHV7-7*01	83.3	H2	12	H2-12-1	15	FIRDKakGYTTE	BBBBAAALLBBB
D	heavy	Rattus.norvegicus	Ra_IGHV7-7*01	100.0	Ra_IGHV7-7*01	100.0	H3	12	H3-12-*	-1	AREGHTAAPFDY	BBAEBEBBbLAB
D	heavy	Rattus.norvegicus	Ra_IGHV7-7*01	100.0	Ra_IGHV7-7*01	100.0	H4	8	H4-8-1	21	RDNTQNML	BBAAALBB
E	kappa	Rattus.norvegicus	Ra_IGKV22S7*01	94.2	Ra_IGKV22S7*01	90.9	L1	11	L1-11-1	11	KASQNIDKYLN	BBABBAEABBB
E	kappa	Rattus.norvegicus	Ra_IGKV22S7*01	94.2	Ra_IGKV22S7*01	100.0	L2	8	L2-8-1	18	YNTNNLQT	BLLABBBB
E	kappa	Rattus.norvegicus	Ra_IGKV22S7*01	94.2	Ra_IGKV22S7*01	85.7	L3	9	L3-9-cis7-1	10	LQHISRPRT	BBAABBbBB
E	kappa	Rattus.norvegicus	Ra_IGKV22S7*01	94.2	Ra_IGKV22S7*01	83.3	L4	6	L4-6-1	12	GSGTDF	EBEABB
F	heavy	Rattus.norvegicus	Ra_IGHV7-7*01	100.0	Ra_IGHV7-7*01	92.3	H1	13	H1-13-1	15	AGSGFTFTDFYMN	BBBLBBAAABBBB
F	heavy	Rattus.norvegicus	Ra_IGHV7-7*01	100.0	Ra_IGHV7-7*01	83.3	H2	12	H2-12-1	14	FIRDKakGYTTE	BBBBAAALLBBB
F	heavy	Rattus.norvegicus	Ra_IGHV7-7*01	100.0	Ra_IGHV7-7*01	100.0	H3	12	H3-12-*	-1	AREGHTAAPFDY	BBAEBEBBbLAB
F	heavy	Rattus.norvegicus	Ra_IGHV7-7*01	100.0	Ra_IGHV7-7*01	100.0	H4	8	H4-8-1	21	RDNTQNML	BBAAALBB
G	kappa	Rattus.norvegicus	Ra_IGKV22S7*01	94.2	Ra_IGKV22S7*01	90.9	L1	11	L1-11-1	18	KASQNIDKYLN	BBABBAEABBB
G	kappa	Rattus.norvegicus	Ra_IGKV22S7*01	94.2	Ra_IGKV22S7*01	100.0	L2	8	L2-8-1	18	YNTNNLQT	BLLABBBB
G	kappa	Rattus.norvegicus	Ra_IGKV22S7*01	94.2	Ra_IGKV22S7*01	85.7	L3	9	L3-9-cis7-1	10	LQHISRPRT	BBAABBbBB
G	kappa	Rattus.norvegicus	Ra_IGKV22S7*01	94.2	Ra_IGKV22S7*01	83.3	L4	6	L4-6-1	12	GSGTDF	EBEABB
H	heavy	Rattus.norvegicus	Ra_IGHV7-7*01	100.0	Ra_IGHV7-7*01	92.3	H1	13	H1-13-1	15	AGSGFTFTDFYMN	BBBLBBAAABBBB
H	heavy	Rattus.norvegicus	Ra_IGHV7-7*01	100.0	Ra_IGHV7-7*01	83.3	H2	12	H2-12-1	15	FIRDKakGYTTE	BBBBAAALLBBB
H	heavy	Rattus.norvegicus	Ra_IGHV7-7*01	100.0	Ra_IGHV7-7*01	100.0	H3	12	H3-12-*	-1	AREGHTAAPFDY	BBAEBEBBbLAB
H	heavy	Rattus.norvegicus	Ra_IGHV7-7*01	100.0	Ra_IGHV7-7*01	100.0	H4	8	H4-8-1	21	RDNTQNML	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022