PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 1AP2

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Mus.musculus	Mo_IGKV8-19*01	100.0	Mo_IGKV8-19*01	100.0	L1	17	L1-17-1	11	KSSQSLlnsgnqKNYLT	BBABBABBAAALBBBBB
A	kappa	Mus.musculus	Mo_IGKV8-19*01	100.0	Mo_IGKV8-19*01	100.0	L2	8	L2-8-1	12	YWASTRES	BLLABBBB
A	kappa	Mus.musculus	Mo_IGKV8-19*01	100.0	Mo_IGKV8-19*01	100.0	L3	9	L3-9-cis7-1	13	QNDYSYPLT	BBAABBbBB
A	kappa	Mus.musculus	Mo_IGKV8-19*01	100.0	Mo_IGKV8-19*01	100.0	L4	6	L4-6-1	11	GSGTDF	EBEABB
B	heavy	Mus.musculus	Mo_IGHV14-3*02	94.5	Mo_IGHV14-3*02	84.6	H1	13	H1-13-1	17	TASGFNIKDDFMH	BBBLBBAAABBBB
B	heavy	Mus.musculus	Mo_IGHV14-3*02	94.5	Mo_IGHV14-3*02	90.0	H2	10	H2-10-1	15	RIDPANDNTK	BBBAAALBBB
B	heavy	Mus.musculus	Mo_IGHV14-3*02	94.5	Mo_IGHV14-3*02	100.0	H3	14	H3-14-*	-1	ARREVYSYYSPLDV	BBBBABEABBBBAB
B	heavy	Mus.musculus	Mo_IGHV14-3*02	94.5	Mo_IGHV14-3*02	100.0	H4	8	H4-8-1	9	ADTSSNTA	BBAAALBB
C	kappa	Mus.musculus	Mo_IGKV8-19*01	100.0	Mo_IGKV8-19*01	100.0	L1	17	L1-17-1	7	KSSQSLlnsgnqKNYLT	BBABBABBAAALBBBBB
C	kappa	Mus.musculus	Mo_IGKV8-19*01	100.0	Mo_IGKV8-19*01	100.0	L2	8	L2-8-1	10	YWASTRES	BLLABBBB
C	kappa	Mus.musculus	Mo_IGKV8-19*01	100.0	Mo_IGKV8-19*01	100.0	L3	9	L3-9-cis7-1	13	QNDYSYPLT	BBAABBbBB
C	kappa	Mus.musculus	Mo_IGKV8-19*01	100.0	Mo_IGKV8-19*01	100.0	L4	6	L4-6-3	16	GSGTDF	EBAABB
D	heavy	Mus.musculus	Mo_IGHV14-3*02	94.5	Mo_IGHV14-3*02	84.6	H1	13	H1-13-1	17	TASGFNIKDDFMH	BBBLBBAAABBBB
D	heavy	Mus.musculus	Mo_IGHV14-3*02	94.5	Mo_IGHV14-3*02	90.0	H2	10	H2-10-1	18	RIDPANDNTK	BBBAAALBBB
D	heavy	Mus.musculus	Mo_IGHV14-3*02	94.5	Mo_IGHV14-3*02	100.0	H3	14	H3-14-*	-1	ARREVYSYYSPLDV	BBBBAABABBBBAB
D	heavy	Mus.musculus	Mo_IGHV14-3*02	94.5	Mo_IGHV14-3*02	100.0	H4	8	H4-8-1	11	ADTSSNTA	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022