PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 1AIF

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Mus.musculus	Mo_IGKV4-53*01	95.7	Mo_IGKV4-53*01	100.0	L1	12	L1-12-*	-1	SVSSSISsSNLH	BBABBBBAAABB
A	kappa	Mus.musculus	Mo_IGKV4-53*01	95.7	Mo_IGKV4-53*01	100.0	L2	8	L2-8-4	17	YGTSNLAS	BEAABBBB
A	kappa	Mus.musculus	Mo_IGKV4-53*01	95.7	Mo_IGKV4-53*01	75.0	L3	9	L3-9-cis7-1	14	QQWNSYPYT	BBAABBbBB
A	kappa	Mus.musculus	Mo_IGKV4-53*01	95.7	Mo_IGKV4-53*01	100.0	L4	6	L4-6-2	25	GSGTSY	EBEABB
B	heavy	Mus.musculus	Mo_IGHV6-3*03	91.8	Mo_IGHV6-3*03	92.3	H1	13	H1-13-*	-1	VASGFTFNNYWMS	BBBEBBBABBBBB
B	heavy	Mus.musculus	Mo_IGHV6-3*03	91.8	Mo_IGHV6-3*03	75.0	H2	12	H2-12-*	-1	EIRLNsdNFATH	EBBAALBABBBB
B	heavy	Mus.musculus	Mo_IGHV6-3*03	91.8	Mo_IGHV6-3*03	0.0	H3	12	H3-12-*	-1	VLRPLFYYAVDY	BBBBABABBBBB
B	heavy	Mus.musculus	Mo_IGHV6-3*03	91.8	Mo_IGHV6-3*03	75.0	H4	8	H4-8-1	23	RDDSKSRL	BBAAALBB
H	heavy	Mus.musculus	Mo_IGHV6-3*03	91.8	Mo_IGHV6-3*03	92.3	H1	13	H1-13-*	-1	VASGFTFNNYWMS	BBBEBBBABBBBB
H	heavy	Mus.musculus	Mo_IGHV6-3*03	91.8	Mo_IGHV6-3*03	75.0	H2	12	H2-12-*	-1	EIRLNsdNFATH	EBBAALBABBBB
H	heavy	Mus.musculus	Mo_IGHV6-3*03	91.8	Mo_IGHV6-3*03	0.0	H3	12	H3-12-*	-1	VLRPLFYYAVDY	BBBBABABEBBB
H	heavy	Mus.musculus	Mo_IGHV6-3*03	91.8	Mo_IGHV6-3*03	75.0	H4	8	H4-8-1	25	RDDSKSRL	BBAAALBB
L	kappa	Mus.musculus	Mo_IGKV4-53*01	95.7	Mo_IGKV4-53*01	100.0	L1	12	L1-12-*	-1	SVSSSISsSNLH	BBABBBBAAABB
L	kappa	Mus.musculus	Mo_IGKV4-53*01	95.7	Mo_IGKV4-53*01	100.0	L2	8	L2-8-4	17	YGTSNLAS	BEAABBBB
L	kappa	Mus.musculus	Mo_IGKV4-53*01	95.7	Mo_IGKV4-53*01	75.0	L3	9	L3-9-cis7-1	14	QQWNSYPYT	BBAABBbBB
L	kappa	Mus.musculus	Mo_IGKV4-53*01	95.7	Mo_IGKV4-53*01	100.0	L4	6	L4-6-1	22	GSGTSY	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022