PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 1AHW

#CDRs = 8; #Clusters = 10.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Mus.musculus	Mo_IGKV14-126*01	100.0	Mo_IGKV14-126*01	72.7	L1	11	L1-11-2	18	KASQDIRKYLN	BBAEBALLBBB
A	kappa	Mus.musculus	Mo_IGKV14-126*01	100.0	Mo_IGKV14-126*01	100.0	L2	8	L2-8-1	20	YYATSLAD	BLLABBBB
A	kappa	Mus.musculus	Mo_IGKV14-126*01	100.0	Mo_IGKV14-126*01	100.0	L3	9	L3-9-cis7-1	14	LQHGESPYT	BBAABBbBB
A	kappa	Mus.musculus	Mo_IGKV14-126*01	100.0	Mo_IGKV14-126*01	100.0	L4	6	L4-6-1	18	GSGQDY	EBEABB
B	heavy	Mus.musculus	Mo_IGHV14-1*02	98.6	Mo_IGHV14-1*02	100.0	H1	13	H1-13-1	18	KASGFNIKDYYMH	BBBLBBAAABBBB
B	heavy	Mus.musculus	Mo_IGHV14-1*02	98.6	Mo_IGHV14-1*02	90.0	H2	10	H2-10-*	-1	LIDPENGNTI	BBBAABLBBB
B	heavy	Mus.musculus	Mo_IGHV14-1*02	98.6	Mo_IGHV14-1*02	100.0	H3	10	H3-10-*	-1	ARDNSYYFDY	BBBAEABBAB
B	heavy	Mus.musculus	Mo_IGHV14-1*02	98.6	Mo_IGHV14-1*02	100.0	H4	8	H4-8-1	12	ADTSSNTA	BBAAALBB
D	kappa	Mus.musculus	Mo_IGKV14-126*01	100.0	Mo_IGKV14-126*01	72.7	L1	11	L1-11-2	11	KASQDIRKYLN	BBABBALLBBB
D	kappa	Mus.musculus	Mo_IGKV14-126*01	100.0	Mo_IGKV14-126*01	100.0	L2	8	L2-8-*	-1	YYATSLAD	BLEABBBB
D	kappa	Mus.musculus	Mo_IGKV14-126*01	100.0	Mo_IGKV14-126*01	100.0	L3	9	L3-9-cis7-1	18	LQHGESPYT	BBAABBbBB
D	kappa	Mus.musculus	Mo_IGKV14-126*01	100.0	Mo_IGKV14-126*01	100.0	L4	6	L4-6-1	20	GSGQDY	EBEABB
E	heavy	Mus.musculus	Mo_IGHV14-1*02	98.6	Mo_IGHV14-1*02	100.0	H1	13	H1-13-1	18	KASGFNIKDYYMH	BBBLBBAAABBBB
E	heavy	Mus.musculus	Mo_IGHV14-1*02	98.6	Mo_IGHV14-1*02	90.0	H2	10	H2-10-1	25	LIDPENGNTI	BBBAABLBBB
E	heavy	Mus.musculus	Mo_IGHV14-1*02	98.6	Mo_IGHV14-1*02	100.0	H3	10	H3-10-*	-1	ARDNSYYFDY	BBBAEABBAB
E	heavy	Mus.musculus	Mo_IGHV14-1*02	98.6	Mo_IGHV14-1*02	100.0	H4	8	H4-8-1	12	ADTSSNTA	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022