PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 1A6T

#CDRs = 8; #Clusters = 9.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Mus.musculus	Mo_IGKV4-72*01	92.5	Mo_IGKV4-72*01	70.0	L1	10	L1-10-1	17	SPSSSVSYMQ	BBABBBABBB
A	kappa	Mus.musculus	Mo_IGKV4-72*01	92.5	Mo_IGKV4-72*01	87.5	L2	8	L2-8-1	11	YSTSNLAS	BLLABBBB
A	kappa	Mus.musculus	Mo_IGKV4-72*01	92.5	Mo_IGKV4-72*01	62.5	L3	9	L3-9-cis7-1	20	QQYSSHPLT	BBAABBbBB
A	kappa	Mus.musculus	Mo_IGKV4-72*01	92.5	Mo_IGKV4-72*01	83.3	L4	6	L4-6-1	15	GSGTSF	EBEABB
B	heavy	Mus.musculus	Mo_IGHV1-26*01	94.5	Mo_IGHV1-26*01	69.2	H1	13	H1-13-1	10	KASGYSFSTYYMH	BBBLBBAAABBBB
B	heavy	Mus.musculus	Mo_IGHV1-26*01	94.5	Mo_IGHV1-26*01	60.0	H2	10	H2-10-1	10	RVDPDNGGTS	BBBAAALBBB
B	heavy	Mus.musculus	Mo_IGHV1-26*01	94.5	Mo_IGHV1-26*01	100.0	H3	10	H3-10-*	-1	ARRDDYYFDF	BBBALABBAB
B	heavy	Mus.musculus	Mo_IGHV1-26*01	94.5	Mo_IGHV1-26*01	100.0	H4	8	H4-8-1	9	VDKSSSTA	BBAAALBB
C	kappa	Mus.musculus	Mo_IGKV4-72*01	92.5	Mo_IGKV4-72*01	70.0	L1	10	L1-10-1	13	SPSSSVSYMQ	BBABBBABBB
C	kappa	Mus.musculus	Mo_IGKV4-72*01	92.5	Mo_IGKV4-72*01	87.5	L2	8	L2-8-1	13	YSTSNLAS	BLLABBBB
C	kappa	Mus.musculus	Mo_IGKV4-72*01	92.5	Mo_IGKV4-72*01	62.5	L3	9	L3-9-2	18	QQYSSHPLT	BBAABABBB
C	kappa	Mus.musculus	Mo_IGKV4-72*01	92.5	Mo_IGKV4-72*01	83.3	L4	6	L4-6-1	14	GSGTSF	EBEABB
D	heavy	Mus.musculus	Mo_IGHV1-26*01	94.5	Mo_IGHV1-26*01	69.2	H1	13	H1-13-1	12	KASGYSFSTYYMH	BBBLBBAAABBBB
D	heavy	Mus.musculus	Mo_IGHV1-26*01	94.5	Mo_IGHV1-26*01	60.0	H2	10	H2-10-1	11	RVDPDNGGTS	BBBAAALBBB
D	heavy	Mus.musculus	Mo_IGHV1-26*01	94.5	Mo_IGHV1-26*01	100.0	H3	10	H3-10-*	-1	ARRDDYYFDF	BBBAAABBAB
D	heavy	Mus.musculus	Mo_IGHV1-26*01	94.5	Mo_IGHV1-26*01	100.0	H4	8	H4-8-1	10	VDKSSSTA	BBAAALBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022