PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5O1R

#CDRs = 8; #Clusters = 10.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
H	heavy	Homo.sapiens	Hu_IGHV4-61*01	93.2	Hu_IGHV4-61*01	86.7	H1	15	H1-15-2	17	TVSGGSVSSgsSYWT	BBBLEBAABAABBBB
H	heavy	Homo.sapiens	Hu_IGHV4-61*01	93.2	Hu_IGHV4-61*01	66.7	H2	9	H2-9-1	13	YTSYSGSTK	BBBAALBBB
H	heavy	Homo.sapiens	Hu_IGHV4-61*01	93.2	Hu_IGHV4-61*01	100.0	H3	15	H3-15-*	-1	ARDRFDvASGSSFDF
H	heavy	Homo.sapiens	Hu_IGHV4-61*01	93.2	Hu_IGHV4-61*01	87.5	H4	8	H4-8-1	11	VDMSKNQF	BBAAALBB
I	heavy	Homo.sapiens	Hu_IGHV4-61*01	93.2	Hu_IGHV4-61*01	86.7	H1	15	H1-15-*	-1	TVSGGSVSSgsSYWT	BBBLEBAAALABBBB
I	heavy	Homo.sapiens	Hu_IGHV4-61*01	93.2	Hu_IGHV4-61*01	66.7	H2	9	H2-9-1	13	YTSYSGSTK	BBBAALBBB
I	heavy	Homo.sapiens	Hu_IGHV4-61*01	93.2	Hu_IGHV4-61*01	100.0	H3	15	H3-15-*	-1	ARDRFDvASGSSFDF
I	heavy	Homo.sapiens	Hu_IGHV4-61*01	93.2	Hu_IGHV4-61*01	87.5	H4	8	H4-8-1	13	VDMSKNQF	BBAAALBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	91.2	Hu_IGKV1-39*01	90.9	L1	11	L1-11-1	10	RASQSISNYLN	BBABBAEABBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	91.2	Hu_IGKV1-39*01	87.5	L2	8	L2-8-4	19	YAASSLGS	BEAABBBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	91.2	Hu_IGKV1-39*01	71.4	L3	8	L3-8-3	5	QQSYGSPT	BBAABBBB
L	kappa	Homo.sapiens	Hu_IGKV1-39*01	91.2	Hu_IGKV1-39*01	83.3	L4	6	L4-6-1	15	GSGTDL	EBEABB
M	kappa	Homo.sapiens	Hu_IGKV1-39*01	91.2	Hu_IGKV1-39*01	90.9	L1	11	L1-11-1	10	RASQSISNYLN	BBABBAEABBB
M	kappa	Homo.sapiens	Hu_IGKV1-39*01	91.2	Hu_IGKV1-39*01	87.5	L2	8	L2-8-1	17	YAASSLGS	BLEABBBB
M	kappa	Homo.sapiens	Hu_IGKV1-39*01	91.2	Hu_IGKV1-39*01	71.4	L3	8	L3-8-3	5	QQSYGSPT	BBAABBBB
M	kappa	Homo.sapiens	Hu_IGKV1-39*01	91.2	Hu_IGKV1-39*01	83.3	L4	6	L4-6-1	15	GSGTDL	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022