PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 7ZWM

#CDRs = 8; #Clusters = 11.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
B	heavy	Mus.musculus	Mo_IGHV5-6-2*01	97.2	Mo_IGHV5-6-2*01	100.0	H1	13	H1-13-1	12	AASGFTFSSYYMS	BBBLBBAAABBBB
B	heavy	Mus.musculus	Mo_IGHV5-6-2*01	97.2	Mo_IGHV5-6-2*01	90.0	H2	10	H2-10-2	14	AINNNGGSTY	BBBAALABBB
B	heavy	Mus.musculus	Mo_IGHV5-6-2*01	97.2	Mo_IGHV5-6-2*01	50.0	H3	13	H3-13-*	-1	TRQHYGNLYFFDY	BBBBAAALLBBAB
B	heavy	Mus.musculus	Mo_IGHV5-6-2*01	97.2	Mo_IGHV5-6-2*01	100.0	H4	8	H4-8-1	8	RDNAKNTL	BBAAALBB
C	kappa	Mus.musculus	Mo_IGKV4-72*01	98.6	Mo_IGKV4-72*01	80.0	L1	10	L1-10-1	14	RASSSVTYIH	BBABBBABBB
C	kappa	Mus.musculus	Mo_IGKV4-72*01	98.6	Mo_IGKV4-72*01	75.0	L2	8	L2-8-1	11	QATSSLAS	BLLABBBB
C	kappa	Mus.musculus	Mo_IGKV4-72*01	98.6	Mo_IGKV4-72*01	87.5	L3	9	L3-9-cis7-1	15	QQWSSNPLT	BBBABBbBB
C	kappa	Mus.musculus	Mo_IGKV4-72*01	98.6	Mo_IGKV4-72*01	100.0	L4	6	L4-6-1	16	GSGTSY	EBEABB
D	heavy	Mus.musculus	Mo_IGHV5-9-1*01	97.3	Mo_IGHV5-9-1*01	92.3	H1	13	H1-13-1	10	AASGFTFSNYAMS	BBBLBBAAABBBB
D	heavy	Mus.musculus	Mo_IGHV5-9-1*01	97.3	Mo_IGHV5-9-1*01	80.0	H2	10	H2-10-2	13	TISSGASYTH	BBBAALABBB
D	heavy	Mus.musculus	Mo_IGHV5-9-1*01	97.3	Mo_IGHV5-9-1*01	50.0	H3	16	H3-16-*	-1	GRQVNRHdrALDAMDY
D	heavy	Mus.musculus	Mo_IGHV5-9-1*01	97.3	Mo_IGHV5-9-1*01	100.0	H4	8	H4-8-1	10	RDNAKNTL	BBAAALBB
E	kappa	Mus.musculus	Mo_IGKV8-30*01	100.0	Mo_IGKV8-30*01	94.1	L1	17	L1-17-1	15	KSSQSLfyssnqKNYLA	BBABBABBAAALBBBBB
E	kappa	Mus.musculus	Mo_IGKV8-30*01	100.0	Mo_IGKV8-30*01	100.0	L2	8	L2-8-1	13	YWASTRES	BLLABBBB
E	kappa	Mus.musculus	Mo_IGKV8-30*01	100.0	Mo_IGKV8-30*01	100.0	L3	9	L3-9-cis7-1	8	QQYYSYPPT	BBAABBbBB
E	kappa	Mus.musculus	Mo_IGKV8-30*01	100.0	Mo_IGKV8-30*01	100.0	L4	6	L4-6-1	21	GSGTDF	BBEABB
G	heavy	Mus.musculus	Mo_IGHV5-6-2*01	97.2	Mo_IGHV5-6-2*01	100.0	H1	13	H1-13-1	12	AASGFTFSSYYMS	BBBLBBAAABBBB
G	heavy	Mus.musculus	Mo_IGHV5-6-2*01	97.2	Mo_IGHV5-6-2*01	90.0	H2	10	H2-10-2	15	AINNNGGSTY	BBBAALABBB
G	heavy	Mus.musculus	Mo_IGHV5-6-2*01	97.2	Mo_IGHV5-6-2*01	50.0	H3	13	H3-13-*	-1	TRQHYGNLYFFDY	BBBBAAALLBBAB
G	heavy	Mus.musculus	Mo_IGHV5-6-2*01	97.2	Mo_IGHV5-6-2*01	100.0	H4	8	H4-8-1	7	RDNAKNTL	BBAAALBB
H	kappa	Mus.musculus	Mo_IGKV4-72*01	98.6	Mo_IGKV4-72*01	80.0	L1	10	L1-10-1	14	RASSSVTYIH	BBABBBABBB
H	kappa	Mus.musculus	Mo_IGKV4-72*01	98.6	Mo_IGKV4-72*01	75.0	L2	8	L2-8-1	11	QATSSLAS	BLLABBBB
H	kappa	Mus.musculus	Mo_IGKV4-72*01	98.6	Mo_IGKV4-72*01	87.5	L3	9	L3-9-cis7-1	16	QQWSSNPLT	BBBABBbBB
H	kappa	Mus.musculus	Mo_IGKV4-72*01	98.6	Mo_IGKV4-72*01	100.0	L4	6	L4-6-1	11	GSGTSY	EBEABB
I	heavy	Mus.musculus	Mo_IGHV5-9-1*01	97.3	Mo_IGHV5-9-1*01	92.3	H1	13	H1-13-1	10	AASGFTFSNYAMS	BBBLBBAAABBBB
I	heavy	Mus.musculus	Mo_IGHV5-9-1*01	97.3	Mo_IGHV5-9-1*01	80.0	H2	10	H2-10-2	13	TISSGASYTH	BBBAALABBB
I	heavy	Mus.musculus	Mo_IGHV5-9-1*01	97.3	Mo_IGHV5-9-1*01	50.0	H3	16	H3-16-*	-1	GRQVNRHdrALDAMDY
I	heavy	Mus.musculus	Mo_IGHV5-9-1*01	97.3	Mo_IGHV5-9-1*01	100.0	H4	8	H4-8-1	10	RDNAKNTL	BBAAALBB
J	kappa	Mus.musculus	Mo_IGKV8-30*01	100.0	Mo_IGKV8-30*01	94.1	L1	17	L1-17-1	14	KSSQSLfyssnqKNYLA	BBABBABBAAALBBBBB
J	kappa	Mus.musculus	Mo_IGKV8-30*01	100.0	Mo_IGKV8-30*01	100.0	L2	8	L2-8-4	14	YWASTRES	BEAABBBB
J	kappa	Mus.musculus	Mo_IGKV8-30*01	100.0	Mo_IGKV8-30*01	100.0	L3	9	L3-9-cis7-1	8	QQYYSYPPT	BBAABBbBB
J	kappa	Mus.musculus	Mo_IGKV8-30*01	100.0	Mo_IGKV8-30*01	100.0	L4	6	L4-6-1	21	GSGTDF	BBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022