PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 7ZFE

#CDRs = 8; #Clusters = 10.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
F	heavy	Homo.sapiens	Hu_IGHV3-33*01	97.3	Hu_IGHV3-33*01	92.3	H1	13	H1-13-1	7	AASGFTFSNYGMH	BBBLBBAAABBBB
F	heavy	Homo.sapiens	Hu_IGHV3-33*01	97.3	Hu_IGHV3-33*01	70.0	H2	10	H2-10-1	18	VYWYDGGNKF	BBBAAALBBB
F	heavy	Homo.sapiens	Hu_IGHV3-33*01	97.3	Hu_IGHV3-33*01	100.0	H3	9	H3-9-*	-1	ARDTAPPDY	BBABBbBAB
F	heavy	Homo.sapiens	Hu_IGHV3-33*01	97.3	Hu_IGHV3-33*01	100.0	H4	8	H4-8-1	4	RDNSKNTL	BBAAALBB
G	kappa	Homo.sapiens	Hu_IGKV3-20*01	97.1	Hu_IGKV3-20*01	83.3	L1	12	L1-12-1	9	RASQSISSsFLA	BBABBBBAABBB
G	kappa	Homo.sapiens	Hu_IGKV3-20*01	97.1	Hu_IGKV3-20*01	100.0	L2	8	L2-8-1	8	YGASSRAT	BLLABBBB
G	kappa	Homo.sapiens	Hu_IGKV3-20*01	97.1	Hu_IGKV3-20*01	85.7	L3	10	L3-10-*	-1	QQYGTSPrLT	BBBLABABBB
G	kappa	Homo.sapiens	Hu_IGKV3-20*01	97.1	Hu_IGKV3-20*01	100.0	L4	6	L4-6-1	2	GSGTDF	EBEABB
H	heavy	Homo.sapiens	Hu_IGHV3-33*01	97.3	Hu_IGHV3-33*01	92.3	H1	13	H1-13-1	8	AASGFTFSNYGMH	BBBLBBAAABBBB
H	heavy	Homo.sapiens	Hu_IGHV3-33*01	97.3	Hu_IGHV3-33*01	70.0	H2	10	H2-10-1	18	VYWYDGGNKF	BBBAAALBBB
H	heavy	Homo.sapiens	Hu_IGHV3-33*01	97.3	Hu_IGHV3-33*01	100.0	H3	9	H3-9-*	-1	ARDTAPPDY	BBABBaBAB
H	heavy	Homo.sapiens	Hu_IGHV3-33*01	97.3	Hu_IGHV3-33*01	100.0	H4	8	H4-8-1	4	RDNSKNTL	BBAAALBB
J	heavy	Homo.sapiens	Hu_IGHV3-33*01	97.3	Hu_IGHV3-33*01	92.3	H1	13	H1-13-1	7	AASGFTFSNYGMH	BBBLBBAAABBBB
J	heavy	Homo.sapiens	Hu_IGHV3-33*01	97.3	Hu_IGHV3-33*01	70.0	H2	10	H2-10-1	18	VYWYDGGNKF	BBBAAALBBB
J	heavy	Homo.sapiens	Hu_IGHV3-33*01	97.3	Hu_IGHV3-33*01	100.0	H3	9	H3-9-*	-1	ARDTAPPDY	BBABBaBAB
J	heavy	Homo.sapiens	Hu_IGHV3-33*01	97.3	Hu_IGHV3-33*01	100.0	H4	8	H4-8-1	4	RDNSKNTL	BBAAALBB
K	kappa	Homo.sapiens	Hu_IGKV3-20*01	97.1	Hu_IGKV3-20*01	83.3	L1	12	L1-12-1	9	RASQSISSsFLA	BBABBBBAABBB
K	kappa	Homo.sapiens	Hu_IGKV3-20*01	97.1	Hu_IGKV3-20*01	100.0	L2	8	L2-8-1	8	YGASSRAT	BLLABBBB
K	kappa	Homo.sapiens	Hu_IGKV3-20*01	97.1	Hu_IGKV3-20*01	85.7	L3	10	L3-10-*	-1	QQYGTSPrLT	BBBLABABBB
K	kappa	Homo.sapiens	Hu_IGKV3-20*01	97.1	Hu_IGKV3-20*01	100.0	L4	6	L4-6-1	2	GSGTDF	EBEABB
L	kappa	Homo.sapiens	Hu_IGKV3-20*01	97.1	Hu_IGKV3-20*01	83.3	L1	12	L1-12-1	9	RASQSISSsFLA	BBABBBBAABBB
L	kappa	Homo.sapiens	Hu_IGKV3-20*01	97.1	Hu_IGKV3-20*01	100.0	L2	8	L2-8-1	8	YGASSRAT	BLLABBBB
L	kappa	Homo.sapiens	Hu_IGKV3-20*01	97.1	Hu_IGKV3-20*01	85.7	L3	10	L3-10-*	-1	QQYGTSPrLT	BBBLABABBB
L	kappa	Homo.sapiens	Hu_IGKV3-20*01	97.1	Hu_IGKV3-20*01	100.0	L4	6	L4-6-1	2	GSGTDF	EBEABB
M	heavy	Homo.sapiens	Hu_IGHV3-33*01	97.3	Hu_IGHV3-33*01	92.3	H1	13	H1-13-1	7	AASGFTFSNYGMH	BBBLBBAAABBBB
M	heavy	Homo.sapiens	Hu_IGHV3-33*01	97.3	Hu_IGHV3-33*01	70.0	H2	10	H2-10-1	18	VYWYDGGNKF	BBBAAALBBB
M	heavy	Homo.sapiens	Hu_IGHV3-33*01	97.3	Hu_IGHV3-33*01	100.0	H3	9	H3-9-*	-1	ARDTAPPDY	BBABBbBAB
M	heavy	Homo.sapiens	Hu_IGHV3-33*01	97.3	Hu_IGHV3-33*01	100.0	H4	8	H4-8-1	4	RDNSKNTL	BBAAALBB
N	kappa	Homo.sapiens	Hu_IGKV3-20*01	97.1	Hu_IGKV3-20*01	83.3	L1	12	L1-12-1	9	RASQSISSsFLA	BBABBBBAABBB
N	kappa	Homo.sapiens	Hu_IGKV3-20*01	97.1	Hu_IGKV3-20*01	100.0	L2	8	L2-8-1	8	YGASSRAT	BLLABBBB
N	kappa	Homo.sapiens	Hu_IGKV3-20*01	97.1	Hu_IGKV3-20*01	85.7	L3	10	L3-10-*	-1	QQYGTSPrLT	BBBLABABBB
N	kappa	Homo.sapiens	Hu_IGKV3-20*01	97.1	Hu_IGKV3-20*01	100.0	L4	6	L4-6-1	2	GSGTDF	EBEABB
W	heavy	Lama.glama	La_IGHV1S1*01_VHH	91.8	La_IGHV1S1*01_VHH	69.2	H1	13	H1-13-*	-1	AASGFTNDFYSIA	BBABBABABBBBB
W	heavy	Lama.glama	La_IGHV1S1*01_VHH	91.8	La_IGHV1S1*01_VHH	30.0	H2	10	H2-10-1	17	WLSVSDNTPT	BBBAAALBBB
W	heavy	Lama.glama	La_IGHV1S1*01_VHH	91.8	La_IGHV1S1*01_VHH	100.0	H3	17	H3-17-*	-1	AAGRFAGRDtwpSSYDY
W	heavy	Lama.glama	La_IGHV1S1*01_VHH	91.8	La_IGHV1S1*01_VHH	75.0	H4	8	H4-8-1	11	RHNANNTV	BBAAALBB
X	heavy	Lama.glama	La_IGHV1S1*01_VHH	91.8	La_IGHV1S1*01_VHH	69.2	H1	13	H1-13-*	-1	AASGFTNDFYSIA	BBABBABABBBBB
X	heavy	Lama.glama	La_IGHV1S1*01_VHH	91.8	La_IGHV1S1*01_VHH	30.0	H2	10	H2-10-1	17	WLSVSDNTPT	BBBAAALBBB
X	heavy	Lama.glama	La_IGHV1S1*01_VHH	91.8	La_IGHV1S1*01_VHH	100.0	H3	17	H3-17-*	-1	AAGRFAGRDtwpSSYDY
X	heavy	Lama.glama	La_IGHV1S1*01_VHH	91.8	La_IGHV1S1*01_VHH	75.0	H4	8	H4-8-1	11	RHNANNTV	BBAAALBB
Y	heavy	Lama.glama	La_IGHV1S1*01_VHH	91.8	La_IGHV1S1*01_VHH	69.2	H1	13	H1-13-*	-1	AASGFTNDFYSIA	BBABBABABBBBB
Y	heavy	Lama.glama	La_IGHV1S1*01_VHH	91.8	La_IGHV1S1*01_VHH	30.0	H2	10	H2-10-1	17	WLSVSDNTPT	BBBAAALBBB
Y	heavy	Lama.glama	La_IGHV1S1*01_VHH	91.8	La_IGHV1S1*01_VHH	100.0	H3	17	H3-17-*	-1	AAGRFAGRDtwpSSYDY
Y	heavy	Lama.glama	La_IGHV1S1*01_VHH	91.8	La_IGHV1S1*01_VHH	75.0	H4	8	H4-8-1	11	RHNANNTV	BBAAALBB
Z	heavy	Lama.glama	La_IGHV1S1*01_VHH	91.8	La_IGHV1S1*01_VHH	69.2	H1	13	H1-13-*	-1	AASGFTNDFYSIA	BBABBABABBBBB
Z	heavy	Lama.glama	La_IGHV1S1*01_VHH	91.8	La_IGHV1S1*01_VHH	30.0	H2	10	H2-10-1	17	WLSVSDNTPT	BBBAAALBBB
Z	heavy	Lama.glama	La_IGHV1S1*01_VHH	91.8	La_IGHV1S1*01_VHH	100.0	H3	17	H3-17-*	-1	AAGRFAGRDtwpSSYDY
Z	heavy	Lama.glama	La_IGHV1S1*01_VHH	91.8	La_IGHV1S1*01_VHH	75.0	H4	8	H4-8-1	11	RHNANNTV	BBAAALBB

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