PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5Y9F

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
K	kappa	Mus.musculus	Mo_IGKV1-110*01	98.6	Mo_IGKV1-110*01	100.0	L1	16	L1-16-*	-1	RSSQSLvhsngNTYLH	BBABALBBBBABBBBB
K	kappa	Mus.musculus	Mo_IGKV1-110*01	98.6	Mo_IGKV1-110*01	100.0	L2	8	L2-8-1	11	YKVSNRFS	BLLABBBB
K	kappa	Mus.musculus	Mo_IGKV1-110*01	98.6	Mo_IGKV1-110*01	100.0	L3	9	L3-9-cis7-1	13	SQSTHVPFT	BBAABBbBB
K	kappa	Mus.musculus	Mo_IGKV1-110*01	98.6	Mo_IGKV1-110*01	100.0	L4	6	L4-6-1	8	GSGTDF	EBEABB
L	heavy	Mus.musculus	Mo_IGHV5-6-4*01	95.8	Mo_IGHV5-6-4*01	84.6	H1	13	H1-13-1	11	AASGFPFSDYTMS	BBBLBBAAABBBB
L	heavy	Mus.musculus	Mo_IGHV5-6-4*01	95.8	Mo_IGHV5-6-4*01	80.0	H2	10	H2-10-*	-1	SISSGGTYTY	BBBABAABBB
L	heavy	Mus.musculus	Mo_IGHV5-6-4*01	95.8	Mo_IGHV5-6-4*01	100.0	H3	16	H3-16-*	-1	TRASPYYdyDEGYMDY
L	heavy	Mus.musculus	Mo_IGHV5-6-4*01	95.8	Mo_IGHV5-6-4*01	100.0	H4	8	H4-8-1	5	RDNAKNTL	BBAAALBB
M	kappa	Mus.musculus	Mo_IGKV1-110*01	98.6	Mo_IGKV1-110*01	100.0	L1	16	L1-16-*	-1	RSSQSLvhsngNTYLH	BBABALBBBBABBBBB
M	kappa	Mus.musculus	Mo_IGKV1-110*01	98.6	Mo_IGKV1-110*01	100.0	L2	8	L2-8-1	11	YKVSNRFS	BLLABBBB
M	kappa	Mus.musculus	Mo_IGKV1-110*01	98.6	Mo_IGKV1-110*01	100.0	L3	9	L3-9-cis7-1	13	SQSTHVPFT	BBAABBbBB
M	kappa	Mus.musculus	Mo_IGKV1-110*01	98.6	Mo_IGKV1-110*01	100.0	L4	6	L4-6-1	7	GSGTDF	EBEABB
N	heavy	Mus.musculus	Mo_IGHV5-6-4*01	95.8	Mo_IGHV5-6-4*01	84.6	H1	13	H1-13-1	11	AASGFPFSDYTMS	BBBLBBAAABBBB
N	heavy	Mus.musculus	Mo_IGHV5-6-4*01	95.8	Mo_IGHV5-6-4*01	80.0	H2	10	H2-10-*	-1	SISSGGTYTY	BBBABAABBB
N	heavy	Mus.musculus	Mo_IGHV5-6-4*01	95.8	Mo_IGHV5-6-4*01	100.0	H3	16	H3-16-*	-1	TRASPYYdyDEGYMDY
N	heavy	Mus.musculus	Mo_IGHV5-6-4*01	95.8	Mo_IGHV5-6-4*01	100.0	H4	8	H4-8-1	5	RDNAKNTL	BBAAALBB
O	kappa	Mus.musculus	Mo_IGKV1-110*01	98.6	Mo_IGKV1-110*01	100.0	L1	16	L1-16-*	-1	RSSQSLvhsngNTYLH	BBABALBBBBABBBBB
O	kappa	Mus.musculus	Mo_IGKV1-110*01	98.6	Mo_IGKV1-110*01	100.0	L2	8	L2-8-1	11	YKVSNRFS	BLLABBBB
O	kappa	Mus.musculus	Mo_IGKV1-110*01	98.6	Mo_IGKV1-110*01	100.0	L3	9	L3-9-cis7-1	13	SQSTHVPFT	BBAABBbBB
O	kappa	Mus.musculus	Mo_IGKV1-110*01	98.6	Mo_IGKV1-110*01	100.0	L4	6	L4-6-1	8	GSGTDF	EBEABB
P	heavy	Mus.musculus	Mo_IGHV5-6-4*01	95.8	Mo_IGHV5-6-4*01	84.6	H1	13	H1-13-1	11	AASGFPFSDYTMS	BBBLBBAAABBBB
P	heavy	Mus.musculus	Mo_IGHV5-6-4*01	95.8	Mo_IGHV5-6-4*01	80.0	H2	10	H2-10-*	-1	SISSGGTYTY	BBBABAABBB
P	heavy	Mus.musculus	Mo_IGHV5-6-4*01	95.8	Mo_IGHV5-6-4*01	100.0	H3	16	H3-16-*	-1	TRASPYYdyDEGYMDY
P	heavy	Mus.musculus	Mo_IGHV5-6-4*01	95.8	Mo_IGHV5-6-4*01	100.0	H4	8	H4-8-1	5	RDNAKNTL	BBAAALBB
Q	kappa	Mus.musculus	Mo_IGKV1-110*01	98.6	Mo_IGKV1-110*01	100.0	L1	16	L1-16-*	-1	RSSQSLvhsngNTYLH	BBABALBBBBABBBBB
Q	kappa	Mus.musculus	Mo_IGKV1-110*01	98.6	Mo_IGKV1-110*01	100.0	L2	8	L2-8-1	11	YKVSNRFS	BLLABBBB
Q	kappa	Mus.musculus	Mo_IGKV1-110*01	98.6	Mo_IGKV1-110*01	100.0	L3	9	L3-9-cis7-1	13	SQSTHVPFT	BBAABBbBB
Q	kappa	Mus.musculus	Mo_IGKV1-110*01	98.6	Mo_IGKV1-110*01	100.0	L4	6	L4-6-1	8	GSGTDF	EBEABB
R	heavy	Mus.musculus	Mo_IGHV5-6-4*01	95.8	Mo_IGHV5-6-4*01	84.6	H1	13	H1-13-1	11	AASGFPFSDYTMS	BBBLBBAAABBBB
R	heavy	Mus.musculus	Mo_IGHV5-6-4*01	95.8	Mo_IGHV5-6-4*01	80.0	H2	10	H2-10-*	-1	SISSGGTYTY	BBBABAABBB
R	heavy	Mus.musculus	Mo_IGHV5-6-4*01	95.8	Mo_IGHV5-6-4*01	100.0	H3	16	H3-16-*	-1	TRASPYYdyDEGYMDY
R	heavy	Mus.musculus	Mo_IGHV5-6-4*01	95.8	Mo_IGHV5-6-4*01	100.0	H4	8	H4-8-1	5	RDNAKNTL	BBAAALBB
S	kappa	Mus.musculus	Mo_IGKV1-110*01	98.6	Mo_IGKV1-110*01	100.0	L1	16	L1-16-*	-1	RSSQSLvhsngNTYLH	BBABALBBBBABBBBB
S	kappa	Mus.musculus	Mo_IGKV1-110*01	98.6	Mo_IGKV1-110*01	100.0	L2	8	L2-8-1	11	YKVSNRFS	BLLABBBB
S	kappa	Mus.musculus	Mo_IGKV1-110*01	98.6	Mo_IGKV1-110*01	100.0	L3	9	L3-9-cis7-1	13	SQSTHVPFT	BBAABBbBB
S	kappa	Mus.musculus	Mo_IGKV1-110*01	98.6	Mo_IGKV1-110*01	100.0	L4	6	L4-6-1	8	GSGTDF	EBEABB
T	heavy	Mus.musculus	Mo_IGHV5-6-4*01	95.8	Mo_IGHV5-6-4*01	84.6	H1	13	H1-13-1	11	AASGFPFSDYTMS	BBBLBBAAABBBB
T	heavy	Mus.musculus	Mo_IGHV5-6-4*01	95.8	Mo_IGHV5-6-4*01	80.0	H2	10	H2-10-*	-1	SISSGGTYTY	BBBABAABBB
T	heavy	Mus.musculus	Mo_IGHV5-6-4*01	95.8	Mo_IGHV5-6-4*01	100.0	H3	16	H3-16-*	-1	TRASPYYdyDEGYMDY
T	heavy	Mus.musculus	Mo_IGHV5-6-4*01	95.8	Mo_IGHV5-6-4*01	100.0	H4	8	H4-8-1	5	RDNAKNTL	BBAAALBB
U	kappa	Mus.musculus	Mo_IGKV1-110*01	98.6	Mo_IGKV1-110*01	100.0	L1	16	L1-16-*	-1	RSSQSLvhsngNTYLH	BBABALBBBBABBBBB
U	kappa	Mus.musculus	Mo_IGKV1-110*01	98.6	Mo_IGKV1-110*01	100.0	L2	8	L2-8-1	11	YKVSNRFS	BLLABBBB
U	kappa	Mus.musculus	Mo_IGKV1-110*01	98.6	Mo_IGKV1-110*01	100.0	L3	9	L3-9-cis7-1	13	SQSTHVPFT	BBAABBbBB
U	kappa	Mus.musculus	Mo_IGKV1-110*01	98.6	Mo_IGKV1-110*01	100.0	L4	6	L4-6-1	7	GSGTDF	EBEABB
V	heavy	Mus.musculus	Mo_IGHV5-6-4*01	95.8	Mo_IGHV5-6-4*01	84.6	H1	13	H1-13-1	11	AASGFPFSDYTMS	BBBLBBAAABBBB
V	heavy	Mus.musculus	Mo_IGHV5-6-4*01	95.8	Mo_IGHV5-6-4*01	80.0	H2	10	H2-10-*	-1	SISSGGTYTY	BBBABAABBB
V	heavy	Mus.musculus	Mo_IGHV5-6-4*01	95.8	Mo_IGHV5-6-4*01	100.0	H3	16	H3-16-*	-1	TRASPYYdyDEGYMDY
V	heavy	Mus.musculus	Mo_IGHV5-6-4*01	95.8	Mo_IGHV5-6-4*01	100.0	H4	8	H4-8-1	5	RDNAKNTL	BBAAALBB
W	kappa	Mus.musculus	Mo_IGKV1-110*01	98.6	Mo_IGKV1-110*01	100.0	L1	16	L1-16-*	-1	RSSQSLvhsngNTYLH	BBABALBBBBABBBBB
W	kappa	Mus.musculus	Mo_IGKV1-110*01	98.6	Mo_IGKV1-110*01	100.0	L2	8	L2-8-1	11	YKVSNRFS	BLLABBBB
W	kappa	Mus.musculus	Mo_IGKV1-110*01	98.6	Mo_IGKV1-110*01	100.0	L3	9	L3-9-cis7-1	12	SQSTHVPFT	BBAABBbBB
W	kappa	Mus.musculus	Mo_IGKV1-110*01	98.6	Mo_IGKV1-110*01	100.0	L4	6	L4-6-1	7	GSGTDF	EBEABB
X	heavy	Mus.musculus	Mo_IGHV5-6-4*01	95.8	Mo_IGHV5-6-4*01	84.6	H1	13	H1-13-1	11	AASGFPFSDYTMS	BBBLBBAAABBBB
X	heavy	Mus.musculus	Mo_IGHV5-6-4*01	95.8	Mo_IGHV5-6-4*01	80.0	H2	10	H2-10-*	-1	SISSGGTYTY	BBBABAABBB
X	heavy	Mus.musculus	Mo_IGHV5-6-4*01	95.8	Mo_IGHV5-6-4*01	100.0	H3	16	H3-16-*	-1	TRASPYYdyDEGYMDY
X	heavy	Mus.musculus	Mo_IGHV5-6-4*01	95.8	Mo_IGHV5-6-4*01	100.0	H4	8	H4-8-1	5	RDNAKNTL	BBAAALBB
Y	kappa	Mus.musculus	Mo_IGKV1-110*01	98.6	Mo_IGKV1-110*01	100.0	L1	16	L1-16-*	-1	RSSQSLvhsngNTYLH	BBABALBBBBABBBBB
Y	kappa	Mus.musculus	Mo_IGKV1-110*01	98.6	Mo_IGKV1-110*01	100.0	L2	8	L2-8-1	11	YKVSNRFS	BLLABBBB
Y	kappa	Mus.musculus	Mo_IGKV1-110*01	98.6	Mo_IGKV1-110*01	100.0	L3	9	L3-9-cis7-1	13	SQSTHVPFT	BBAABBbBB
Y	kappa	Mus.musculus	Mo_IGKV1-110*01	98.6	Mo_IGKV1-110*01	100.0	L4	6	L4-6-1	8	GSGTDF	EBEABB
Z	heavy	Mus.musculus	Mo_IGHV5-6-4*01	95.8	Mo_IGHV5-6-4*01	84.6	H1	13	H1-13-1	11	AASGFPFSDYTMS	BBBLBBAAABBBB
Z	heavy	Mus.musculus	Mo_IGHV5-6-4*01	95.8	Mo_IGHV5-6-4*01	80.0	H2	10	H2-10-*	-1	SISSGGTYTY	BBBABAABBB
Z	heavy	Mus.musculus	Mo_IGHV5-6-4*01	95.8	Mo_IGHV5-6-4*01	100.0	H3	16	H3-16-*	-1	TRASPYYdyDEGYMDY
Z	heavy	Mus.musculus	Mo_IGHV5-6-4*01	95.8	Mo_IGHV5-6-4*01	100.0	H4	8	H4-8-1	5	RDNAKNTL	BBAAALBB
a	kappa	Mus.musculus	Mo_IGKV1-110*01	98.6	Mo_IGKV1-110*01	100.0	L1	16	L1-16-*	-1	RSSQSLvhsngNTYLH	BBABALBBBBABBBBB
a	kappa	Mus.musculus	Mo_IGKV1-110*01	98.6	Mo_IGKV1-110*01	100.0	L2	8	L2-8-1	11	YKVSNRFS	BLLABBBB
a	kappa	Mus.musculus	Mo_IGKV1-110*01	98.6	Mo_IGKV1-110*01	100.0	L3	9	L3-9-cis7-1	13	SQSTHVPFT	BBAABBbBB
a	kappa	Mus.musculus	Mo_IGKV1-110*01	98.6	Mo_IGKV1-110*01	100.0	L4	6	L4-6-1	7	GSGTDF	EBEABB
b	heavy	Mus.musculus	Mo_IGHV5-6-4*01	95.8	Mo_IGHV5-6-4*01	84.6	H1	13	H1-13-1	11	AASGFPFSDYTMS	BBBLBBAAABBBB
b	heavy	Mus.musculus	Mo_IGHV5-6-4*01	95.8	Mo_IGHV5-6-4*01	80.0	H2	10	H2-10-*	-1	SISSGGTYTY	BBBABAABBB
b	heavy	Mus.musculus	Mo_IGHV5-6-4*01	95.8	Mo_IGHV5-6-4*01	100.0	H3	16	H3-16-*	-1	TRASPYYdyDEGYMDY
b	heavy	Mus.musculus	Mo_IGHV5-6-4*01	95.8	Mo_IGHV5-6-4*01	100.0	H4	8	H4-8-1	5	RDNAKNTL	BBAAALBB
c	kappa	Mus.musculus	Mo_IGKV1-110*01	98.6	Mo_IGKV1-110*01	100.0	L1	16	L1-16-*	-1	RSSQSLvhsngNTYLH	BBABALBBBBABBBBB
c	kappa	Mus.musculus	Mo_IGKV1-110*01	98.6	Mo_IGKV1-110*01	100.0	L2	8	L2-8-1	11	YKVSNRFS	BLLABBBB
c	kappa	Mus.musculus	Mo_IGKV1-110*01	98.6	Mo_IGKV1-110*01	100.0	L3	9	L3-9-cis7-1	13	SQSTHVPFT	BBAABBbBB
c	kappa	Mus.musculus	Mo_IGKV1-110*01	98.6	Mo_IGKV1-110*01	100.0	L4	6	L4-6-1	7	GSGTDF	EBEABB
d	heavy	Mus.musculus	Mo_IGHV5-6-4*01	95.8	Mo_IGHV5-6-4*01	84.6	H1	13	H1-13-1	11	AASGFPFSDYTMS	BBBLBBAAABBBB
d	heavy	Mus.musculus	Mo_IGHV5-6-4*01	95.8	Mo_IGHV5-6-4*01	80.0	H2	10	H2-10-*	-1	SISSGGTYTY	BBBABAABBB
d	heavy	Mus.musculus	Mo_IGHV5-6-4*01	95.8	Mo_IGHV5-6-4*01	100.0	H3	16	H3-16-*	-1	TRASPYYdyDEGYMDY
d	heavy	Mus.musculus	Mo_IGHV5-6-4*01	95.8	Mo_IGHV5-6-4*01	100.0	H4	8	H4-8-1	5	RDNAKNTL	BBAAALBB

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