PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 8A1E

#CDRs = 8; #Clusters = 13.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
B	heavy	Mus.musculus	Mo_IGHV1S122*01	90.2	Mo_IGHV1S122*01	84.6	H1	13	H1-13-*	-1	KASGYTFSNYWMH	BBBLALLAABBAL
B	heavy	Mus.musculus	Mo_IGHV1S122*01	90.2	Mo_IGHV1S122*01	90.0	H2	10	H2-10-1	7	EINPFNGGTN	BBBAAALBBB
B	heavy	Mus.musculus	Mo_IGHV1S122*01	90.2	Mo_IGHV1S122*01	0.0	H3	14	H3-14-*	-1	TIPLSDYGDWFFAV	BBBAABAABABBAB
B	heavy	Mus.musculus	Mo_IGHV1S122*01	90.2	Mo_IGHV1S122*01	87.5	H4	8	H4-8-*	-1	VDRSSSTA	BALABBBB
C	kappa	Mus.musculus	Mo_IGKV6-17*01	95.7	Mo_IGKV6-17*01	100.0	L1	11	L1-11-1	13	KASQDVSTAVA	BBABBAEABBB
C	kappa	Mus.musculus	Mo_IGKV6-17*01	95.7	Mo_IGKV6-17*01	87.5	L2	8	L2-8-1	18	YSASYRST	BLLABBBB
C	kappa	Mus.musculus	Mo_IGKV6-17*01	95.7	Mo_IGKV6-17*01	85.7	L3	9	L3-9-cis7-1	16	QQHYSAPLT	BBAABBbBB
C	kappa	Mus.musculus	Mo_IGKV6-17*01	95.7	Mo_IGKV6-17*01	100.0	L4	6	L4-6-*	-1	GSGTDF	EBEAAL
D	heavy	Homo.sapiens	Hu_IGHV3-30*01	95.9	Hu_IGHV3-30*01	92.3	H1	13	H1-13-1	10	AASGFTFSTYAMH	BBBLBBAAABBBB
D	heavy	Homo.sapiens	Hu_IGHV3-30*01	95.9	Hu_IGHV3-30*01	60.0	H2	10	H2-10-2	8	VVSYDGRTKD	BBBAALABBB
D	heavy	Homo.sapiens	Hu_IGHV3-30*01	95.9	Hu_IGHV3-30*01	100.0	H3	12	H3-12-*	-1	ARERFSGAYFDY	BBBBAABABBAB
D	heavy	Homo.sapiens	Hu_IGHV3-30*01	95.9	Hu_IGHV3-30*01	100.0	H4	8	H4-8-1	8	RDNSKNTL	BBAAALBB
E	kappa	Homo.sapiens	Hu_IGKV3-11*01	98.6	Hu_IGKV3-11*01	100.0	L1	11	L1-11-1	8	RASQSVSSYLA	BBABBAEABBB
E	kappa	Homo.sapiens	Hu_IGKV3-11*01	98.6	Hu_IGKV3-11*01	100.0	L2	8	L2-8-1	16	YDASNRAT	BLLABBBB
E	kappa	Homo.sapiens	Hu_IGKV3-11*01	98.6	Hu_IGKV3-11*01	85.7	L3	9	L3-9-cis7-1	17	QQRNNWPPT	BBBABBbBB
E	kappa	Homo.sapiens	Hu_IGKV3-11*01	98.6	Hu_IGKV3-11*01	100.0	L4	6	L4-6-1	13	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022