PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDRs for query 5NPI

#CDRs = 8; #Clusters = 8.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Mus.musculus	Mo_IGHV1S113*01	86.9	Mo_IGHV1S113*01	76.9	H1	13	H1-13-1	12	KTSGYTFTDFTFH	BBBLBBAAABBBB
A	heavy	Mus.musculus	Mo_IGHV1S113*01	86.9	Mo_IGHV1S113*01	50.0	H2	10	H2-10-1	8	TIKPSNGDTA	BBBAAALBBB
A	heavy	Mus.musculus	Mo_IGHV1S113*01	86.9	Mo_IGHV1S113*01	0.0	H3	13	H3-13-*	-1	ARFGGSYPYAMDY	BBBBEBBbBBBAB
A	heavy	Mus.musculus	Mo_IGHV1S113*01	86.9	Mo_IGHV1S113*01	87.5	H4	8	H4-8-1	5	VDKSASTA	BBAAALBB
A	kappa	Mus.musculus	Mo_IGKV5-45*01	97.1	Mo_IGKV5-45*01	72.7	L1	11	L1-11-1	8	RASQGIYNYVH	BBABBAEAABB
A	kappa	Mus.musculus	Mo_IGKV5-45*01	97.1	Mo_IGKV5-45*01	100.0	L2	8	L2-8-1	13	KYASQSIS	BLLABBBB
A	kappa	Mus.musculus	Mo_IGKV5-45*01	97.1	Mo_IGKV5-45*01	71.4	L3	9	L3-9-cis7-1	5	QQTNKWPLT	BBAABBbBB
A	kappa	Mus.musculus	Mo_IGKV5-45*01	97.1	Mo_IGKV5-45*01	100.0	L4	6	L4-6-1	7	GSGTDF	EBEABB
B	heavy	Mus.musculus	Mo_IGHV1S113*01	86.9	Mo_IGHV1S113*01	76.9	H1	13	H1-13-1	11	KTSGYTFTDFTFH	BBBLBBAAABBBB
B	heavy	Mus.musculus	Mo_IGHV1S113*01	86.9	Mo_IGHV1S113*01	50.0	H2	10	H2-10-1	7	TIKPSNGDTA	BBBAAALBBB
B	heavy	Mus.musculus	Mo_IGHV1S113*01	86.9	Mo_IGHV1S113*01	0.0	H3	13	H3-13-*	-1	ARFGGSYPYAMDY	BBBBEBBbBBBAB
B	heavy	Mus.musculus	Mo_IGHV1S113*01	86.9	Mo_IGHV1S113*01	87.5	H4	8	H4-8-1	5	VDKSASTA	BBAAALBB
B	kappa	Mus.musculus	Mo_IGKV5-45*01	97.1	Mo_IGKV5-45*01	72.7	L1	11	L1-11-1	7	RASQGIYNYVH	BBABBAEAABB
B	kappa	Mus.musculus	Mo_IGKV5-45*01	97.1	Mo_IGKV5-45*01	100.0	L2	8	L2-8-1	13	KYASQSIS	BLLABBBB
B	kappa	Mus.musculus	Mo_IGKV5-45*01	97.1	Mo_IGKV5-45*01	71.4	L3	9	L3-9-cis7-1	6	QQTNKWPLT	BBAABBbBB
B	kappa	Mus.musculus	Mo_IGKV5-45*01	97.1	Mo_IGKV5-45*01	100.0	L4	6	L4-6-1	6	GSGTDF	EBEABB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022