PyIgClassify2: Canonical Clusters of Antibody CDR Loop Conformations

PyIgClassify2: Classification of Antibody CDR Conformations

CDR Structures for H3-5-*

Structures in cluster H3-5-*
Cluster	PDB	Resolution	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	Sequence	Ramachandran	Distance(°)
H3-5-*	5YY5H	2.8	heavy	Homo.sapiens	Hu_IGHV3-30*01	91.8	Hu_IGHV3-30*01	0.0	TNTYY	BBAAB	-1
H3-5-*	5YY5C	2.8	heavy	Homo.sapiens	Hu_IGHV3-30*01	93.1	Hu_IGHV3-30*01	0.0	TNTYY	BBAAB	-1
H3-5-*	6F7TB	2.6	heavy	Mus.musculus	Hu_IGHV7-4-1*03	72.1	Hu_IGHV7-4-1*03	0.0	ARGTY	BAEAB	-1
H3-5-*	6F7TH	2.6	heavy	Mus.musculus	Hu_IGHV7-4-1*03	72.1	Hu_IGHV7-4-1*03	0.0	ARGTY	BAEAB	-1
H3-5-*	5ZXVC	4.482	heavy	Homo.sapiens	Hu_IGHV3-30-3*02	93.1	Hu_IGHV3-30-3*02	50.0	AGNDY	BBBLB	-1
H3-5-*	5ZXVH	4.482	heavy	Homo.sapiens	Hu_IGHV3-30-3*02	93.1	Hu_IGHV3-30-3*02	50.0	AGNDY	BBBLB	-1
H3-5-*	2Q8AH	2.4	heavy	Mus.musculus	Mo_IGHV14-3*02	98.6	Mo_IGHV14-3*02	0.0	TLSHF	BBEAB	-1
H3-5-*	2Q8BH	2.3	heavy	Mus.musculus	Mo_IGHV14-3*02	97.3	Mo_IGHV14-3*02	0.0	TLSHF	BBEAB	-1
H3-5-*	5DMGH	2.5	heavy	Oryctolagus.cuniculus	Rb_IGHV1S69*01	94.1	Rb_IGHV1S69*01	0.0	GKSNI	EBEAB	-1
H3-5-*	5DMGC	2.5	heavy	Oryctolagus.cuniculus	Rb_IGHV1S69*01	94.1	Rb_IGHV1S69*01	0.0	GKSNI	EBEAB	-1
H3-5-*	5DMGE	2.5	heavy	Oryctolagus.cuniculus	Rb_IGHV1S69*01	94.1	Rb_IGHV1S69*01	0.0	GKSNI	EBEAB	-1
H3-5-*	5JOPE	1.75	heavy	Mus.musculus	Mo_IGHV1-34*01	86.3	Mo_IGHV1-34*01	100.0	ARWDS	BBAAB	-1
H3-5-*	5JORD	2.206	heavy	Mus.musculus	Mo_IGHV1-34*01	86.3	Mo_IGHV1-34*01	100.0	ARWDS	BBAAB	-1
H3-5-*	5JOPH	1.75	heavy	Mus.musculus	Mo_IGHV1-34*01	86.3	Mo_IGHV1-34*01	100.0	ARWDS	BBAAB	-1
H3-5-*	5JORF	2.206	heavy	Mus.musculus	Mo_IGHV1-34*01	86.3	Mo_IGHV1-34*01	100.0	ARWDS	BBAAB	-1
H3-5-*	5JORB	2.206	heavy	Mus.musculus	Mo_IGHV1-34*01	86.3	Mo_IGHV1-34*01	100.0	ARWDS	BBAAB	-1
H3-5-*	5JORH	2.206	heavy	Mus.musculus	Mo_IGHV1-34*01	86.3	Mo_IGHV1-34*01	100.0	ARWDS	BBAAB	-1
H3-5-*	5OBFH	1.92	heavy	Mus.musculus	Mo_IGHV14-2*01	89.0	Mo_IGHV14-2*01	0.0	VSSGY	BBLLB	-1
H3-5-*	6X87K	EM	heavy	Mus.musculus	Mo_IGHV1-12*01	91.7	Mo_IGHV1-12*01	50.0	ASAAY	BBEAB	-1
H3-5-*	6X8PH	2.27	heavy	Mus.musculus	Mo_IGHV1-12*01	91.7	Mo_IGHV1-12*01	50.0	ASAAY	BBEAB	-1
H3-5-*	6X8QH	1.6	heavy	Mus.musculus	Mo_IGHV1-12*01	91.7	Mo_IGHV1-12*01	50.0	ASAAY	BBEAB	-1
H3-5-*	6X87I	EM	heavy	Mus.musculus	Mo_IGHV1-12*01	91.7	Mo_IGHV1-12*01	50.0	ASAAY	BBEAB	-1
H3-5-*	6X8SH	1.55	heavy	Mus.musculus	Mo_IGHV1-12*01	91.7	Mo_IGHV1-12*01	50.0	ASAAY	BBEAB	-1
H3-5-*	6X87A	EM	heavy	Mus.musculus	Mo_IGHV1-12*01	91.7	Mo_IGHV1-12*01	50.0	ASAAY	BBEAB	-1
H3-5-*	6X8UH	1.55	heavy	Mus.musculus	Mo_IGHV1-12*01	91.7	Mo_IGHV1-12*01	50.0	ASAAY	BBEAB	-1
H3-5-*	6X87E	EM	heavy	Mus.musculus	Mo_IGHV1-12*01	91.7	Mo_IGHV1-12*01	50.0	ASAAY	BBEAB	-1
H3-5-*	6X87G	EM	heavy	Mus.musculus	Mo_IGHV1-12*01	91.7	Mo_IGHV1-12*01	50.0	ASAAY	BBEAB	-1
H3-5-*	6X87M	EM	heavy	Mus.musculus	Mo_IGHV1-12*01	91.7	Mo_IGHV1-12*01	50.0	ASAAY	BBEAB	-1
H3-5-*	6X87C	EM	heavy	Mus.musculus	Mo_IGHV1-12*01	91.7	Mo_IGHV1-12*01	50.0	ASAAY	BBEAB	-1
H3-5-*	7O33H	1.85	heavy	Mus.musculus	Mo_IGHV1-23*01	91.8	Mo_IGHV1-23*01	0.0	NLWGR	BBLLB	-1
H3-5-*	1C5BH	2.1	heavy	Mus.musculus.Homo.sapiens	Mo_IGHV1-53*01	91.8	Mo_IGHV1-53*01	50.0	VRIAY	BBBLB	-1
H3-5-*	1C5CH	1.61	heavy	Mus.musculus.Homo.sapiens	Mo_IGHV1-53*01	91.8	Mo_IGHV1-53*01	50.0	VRIAY	BBBLB	-1
H3-5-*	1H8NA	1.87	heavy	Mus.musculus	Mo_IGHV1S70*01	95.1	Mo_IGHV1S70*01	0.0	ARWGY	BBBLB	-1
H3-5-*	1H8OA	2.75	heavy	Mus.musculus	Mo_IGHV1S70*01	96.7	Mo_IGHV1S70*01	0.0	ARWGY	BBBLB	-1
H3-5-*	1H8SA	2.4	heavy	Mus.musculus	Mo_IGHV1S70*01	96.7	Mo_IGHV1S70*01	0.0	ARWGY	BBBLB	-1
H3-5-*	1H8OB	2.75	heavy	Mus.musculus	Mo_IGHV1S70*01	96.7	Mo_IGHV1S70*01	0.0	ARWGY	BBBLB	-1
H3-5-*	1H8SB	2.4	heavy	Mus.musculus	Mo_IGHV1S70*01	96.7	Mo_IGHV1S70*01	0.0	ARWGY	BBBLB	-1
H3-5-*	1I3GH	2.44	heavy	Mus.musculus	Mo_IGHV1S70*01	100.0	Mo_IGHV1S70*01	0.0	ARWGY	BBBLB	-1
H3-5-*	5KVLH	1.74	heavy	Homo.sapiens	Hu_IGHV4-61*08	93.2	Hu_IGHV4-61*08	50.0	ANPRV	BBAAB	-1
H3-5-*	7RT9A	1.9	heavy	Homo.sapiens	Hu_IGHV3-23*05	93.2	Hu_IGHV3-23*05	50.0	ASFAY	BBEAB	-1
H3-5-*	7RTAH	2.6	heavy	Homo.sapiens	Hu_IGHV1-69*15	94.5	Hu_IGHV1-69*15	50.0	ASFAY	BBEAB	-1
H3-5-*	7RT9C	1.9	heavy	Homo.sapiens	Hu_IGHV3-23*05	93.2	Hu_IGHV3-23*05	50.0	ASFAY	BBEAB	-1
H3-5-*	4QT5H	2.5	heavy	Mus.musculus	Mo_IGHV1S72*01	91.8	Mo_IGHV1S72*01	0.0	ARSGY	BBBLB	-1
H3-5-*	4QT5B	2.5	heavy	Mus.musculus	Mo_IGHV1S72*01	91.8	Mo_IGHV1S72*01	0.0	ARSGY	BBBLB	-1
H3-5-*	5L21B	1.68	heavy	Vicugna.pacos	Al_IGHV3S53*01_VHH	80.0	Al_IGHV3S53*01_VHH	50.0	NVGEF	BBEAB	-1
H3-5-*	7LZPG	2.86	heavy	Vicugna.pacos	Al_IGHV3S53*01_VHH	76.7	Al_IGHV3S53*01_VHH	50.0	NSGPY	BBEAB	-1
H3-5-*	7LZPH	2.86	heavy	Vicugna.pacos	Al_IGHV3S53*01_VHH	76.7	Al_IGHV3S53*01_VHH	50.0	NSGPY	BBEAB	-1
H3-5-*	6OQ5E	3.87	heavy	Camelus.dromedarius	Ca_IGHV1S32*01	82.2	Ca_IGHV1S32*01	0.0	KGPEL	BBAAB	-1
H3-5-*	3ZKXC	2.37	heavy	Lama.glama	La_IGHV1S5*01_VHH	72.6	La_IGHV1S5*01_VHH	0.0	IYNGH	BBLLB	-1
H3-5-*	5H8DA	1.89	heavy	Lama.glama	La_IGHV1S4*01_VHH	86.3	La_IGHV1S4*01_VHH	0.0	YVGGF	BBLLB	-1
H3-5-*	5H8OA	4.206	heavy	Lama.glama	La_IGHV1S4*01_VHH	86.3	La_IGHV1S4*01_VHH	0.0	YVGGF	BBLLB	-1
H3-5-*	6OQ7C	2.39	heavy	Camelus.dromedarius	Ca_IGHV1S32*01	82.2	Ca_IGHV1S32*01	0.0	KGPEL	BBAAB	-1
H3-5-*	6SSIG	2.59	heavy	Lama.glama	La_IGHV1S3*01_VHH	89.0	La_IGHV1S3*01_VHH	50.0	NVGAS	BBEAB	-1
H3-5-*	6SSIF	2.59	heavy	Lama.glama	La_IGHV1S3*01_VHH	89.0	La_IGHV1S3*01_VHH	50.0	NVGAS	BBEAB	-1
H3-5-*	6SSIJ	2.59	heavy	Lama.glama	La_IGHV1S3*01_VHH	89.0	La_IGHV1S3*01_VHH	50.0	NVGAS	BBEAB	-1
H3-5-*	6SSII	2.59	heavy	Lama.glama	La_IGHV1S3*01_VHH	89.0	La_IGHV1S3*01_VHH	50.0	NVGAS	BBEAB	-1
H3-5-*	6SSIH	2.59	heavy	Lama.glama	La_IGHV1S3*01_VHH	89.0	La_IGHV1S3*01_VHH	50.0	NVGAS	BBEAB	-1

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on Oct. 13, 2022