PyIgClassify: An antibody CDRs clusters web site

Clusters of Antibody CDR Loop Conformations

CDRs for query 4XWO

#CDRs = 6; #Clusters = 7.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
C	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	53.8	H1	13	H1-13-1	16	AASGFNLYYYSIH	PBBLBPAAABBBB
C	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	50	H2	10	H2-10-1	14	SISPYSSSTS	BBBAADLBBB
C	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-74*01	91.8	Hu_IGHV	-1	H3	12	H3-12-cis3-*	-1	ARGRWYRRALDY	BBlBAABAPPAB
D	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1-5*01	94.2	Hu_IGKV1-5*01	72.7	L1	11	L1-11-1	8	RASQSVSSAVA	BPABPDGDPBB
D	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1-5*01	94.2	Hu_IGKV1-5*01	75	L2	8	L2-8-1	7	YSASSLYS	BLLDPPPP
D	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1-5*01	94.2	Hu_IGKV	-1	L3	11	L3-11-*	-1	QQYPYYSSLIT	BBBPAABAPBB
E	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	53.8	H1	13	H1-13-1	16	AASGFNLYYYSIH	PBBLBPAAABBBB
E	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	50	H2	10	H2-10-1	11	SISPYSSSTS	BBBAADLBBB
E	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-74*01	91.8	Hu_IGHV	-1	H3	12	H3-12-*	-1	ARGRWYRRALDY	BBBBAABAPPAB
F	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1-5*01	94.2	Hu_IGKV1-5*01	72.7	L1	11	L1-11-1	9	RASQSVSSAVA	BPABPDGDPBB
F	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1-5*01	94.2	Hu_IGKV1-5*01	75	L2	8	L2-8-1	6	YSASSLYS	BLLDPPPP
F	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1-5*01	94.2	Hu_IGKV	-1	L3	11	L3-11-*	-1	QQYPYYSSLIT	BBBPAABAPBB
I	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	53.8	H1	13	H1-13-1	15	AASGFNLYYYSIH	PBBLBPAAABBBB
I	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	50	H2	10	H2-10-1	18	SISPYSSSTS	BBBAADLPBB
I	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-74*01	91.8	Hu_IGHV	-1	H3	12	H3-12-cis3-*	-1	ARGRWYRRALDY	BBlBAABAPPAB
J	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1-5*01	94.2	Hu_IGKV1-5*01	72.7	L1	11	L1-11-1	9	RASQSVSSAVA	BPABPDGDPBB
J	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1-5*01	94.2	Hu_IGKV1-5*01	75	L2	8	L2-8-1	6	YSASSLYS	BLLDPPPP
J	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1-5*01	94.2	Hu_IGKV	-1	L3	11	L3-11-*	-1	QQYPYYSSLIT	BBBPAABAPBB
K	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	53.8	H1	13	H1-13-1	16	AASGFNLYYYSIH	PBBLBPAAABBBB
K	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	50	H2	10	H2-10-1	11	SISPYSSSTS	BBBAADLBBB
K	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-74*01	91.8	Hu_IGHV	-1	H3	12	H3-12-*	-1	ARGRWYRRALDY	BBBBAABAPPAB
L	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1-5*01	94.2	Hu_IGKV1-5*01	72.7	L1	11	L1-11-1	8	RASQSVSSAVA	BPABPDGDPBB
L	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1-5*01	94.2	Hu_IGKV1-5*01	75	L2	8	L2-8-1	6	YSASSLYS	BLLDPPPP
L	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1-5*01	94.2	Hu_IGKV	-1	L3	11	L3-11-*	-1	QQYPYYSSLIT	BBBPAABAPBB
O	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	53.8	H1	13	H1-13-1	16	AASGFNLYYYSIH	PBBLBPAAABBBB
O	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	50	H2	10	H2-10-1	11	SISPYSSSTS	BBBAADLPBB
O	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-74*01	91.8	Hu_IGHV	-1	H3	12	H3-12-*	-1	ARGRWYRRALDY	BBBBAABAPPAB
P	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1-5*01	94.2	Hu_IGKV1-5*01	72.7	L1	11	L1-11-1	8	RASQSVSSAVA	BPABPDGDPBB
P	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1-5*01	94.2	Hu_IGKV1-5*01	75	L2	8	L2-8-1	6	YSASSLYS	BLLDPPPP
P	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1-5*01	94.2	Hu_IGKV	-1	L3	11	L3-11-*	-1	QQYPYYSSLIT	BBBPAABAPBB
Q	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	53.8	H1	13	H1-13-1	15	AASGFNLYYYSIH	PBBLBPAAABBBB
Q	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	50	H2	10	H2-10-1	11	SISPYSSSTS	BBBAADLPBB
Q	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-74*01	91.8	Hu_IGHV	-1	H3	12	H3-12-cis3-*	-1	ARGRWYRRALDY	BBlBAABAPPAB
R	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1-5*01	94.2	Hu_IGKV1-5*01	72.7	L1	11	L1-11-1	8	RASQSVSSAVA	BPABPDGDPBB
R	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1-5*01	94.2	Hu_IGKV1-5*01	75	L2	8	L2-8-1	6	YSASSLYS	BLLDPPPP
R	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1-5*01	94.2	Hu_IGKV	-1	L3	11	L3-11-*	-1	QQYPYYSSLIT	BBBPPLBAPBB
U	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	53.8	H1	13	H1-13-1	16	AASGFNLYYYSIH	PBBLBPAAABBBB
U	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	50	H2	10	H2-10-1	19	SISPYSSSTS	BBBAADLPBB
U	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-74*01	91.8	Hu_IGHV	-1	H3	12	H3-12-cis3-*	-1	ARGRWYRRALDY	BBlBAABAPPAB
V	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1-5*01	94.2	Hu_IGKV1-5*01	72.7	L1	11	L1-11-1	9	RASQSVSSAVA	BPABPDGDPBB
V	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1-5*01	94.2	Hu_IGKV1-5*01	75	L2	8	L2-8-1	6	YSASSLYS	BLLDPPPP
V	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1-5*01	94.2	Hu_IGKV	-1	L3	11	L3-11-*	-1	QQYPYYSSLIT	BBBPAABAPBB
W	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	53.8	H1	13	H1-13-1	15	AASGFNLYYYSIH	PBBLBPAAABBBB
W	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-74*01	91.8	Hu_IGHV3-74*01	50	H2	10	H2-10-1	37	SISPYSSSTS	BBBAABDPBB
W	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-74*01	91.8	Hu_IGHV	-1	H3	12	H3-12-cis3-*	-1	ARGRWYRRALDY	BBlBAABAPPAB
X	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1-5*01	94.2	Hu_IGKV1-5*01	72.7	L1	11	L1-11-1	8	RASQSVSSAVA	BPABPDGDPBB
X	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1-5*01	94.2	Hu_IGKV1-5*01	75	L2	8	L2-8-1	6	YSASSLYS	BLLDPPPP
X	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1-5*01	94.2	Hu_IGKV	-1	L3	11	L3-11-*	-1	QQYPYYSSLIT	BBBPAABAPBB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on November 1, 2019