PyIgClassify: An antibody CDRs clusters web site

Clusters of Antibody CDR Loop Conformations

CDRs for query 4R7D

#CDRs = 6; #Clusters = 13.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Mo_IGHV3-1*02	78.6	H1	14	H1-14-1	9	AVSGYSITGGYSWH	PBBLBPAAABGBBB
A	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Mo_IGHV3-1*02	77.8	H2	9	H2-9-1	11	YIHYSGYTD	BBPAALPBB
A	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Mo_IGHV	-1	H3	11	H3-11-cis7-*	-1	ARKDPSDAFPY	BBPPAAbBBAB
B	kappa	Homo.sapiens	Hu_IGKV6D-21*01	100	Hu_IGKV6D-21*01	72.7	L1	11	L1-11-1	21	RASQSISDHLH	BPABPAGAPBB
B	kappa	Homo.sapiens	Hu_IGKV6D-21*01	100	Hu_IGKV6D-21*01	62.5	L2	8	L2-8-cis3-*	-1	KYASHAIS	BLdDPPPP
B	kappa	Homo.sapiens	Hu_IGKV6D-21*01	100	Hu_IGKV	-1	L3	9	L3-9-cis7-1	10	QQGHSFPLT	BBDABPpPB
C	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Mo_IGHV3-1*02	78.6	H1	14	H1-14-1	12	AVSGYSITGGYSWH	PPBLBPADABGBBB
C	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Mo_IGHV3-1*02	77.8	H2	9	H2-9-1	10	YIHYSGYTD	BBPAALPBB
C	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Mo_IGHV	-1	H3	11	H3-11-cis7-*	-1	ARKDPSDAFPY	BBPPAAbPBAB
D	kappa	Homo.sapiens	Hu_IGKV6D-21*01	100	Hu_IGKV6D-21*01	72.7	L1	11	L1-11-1	10	RASQSISDHLH	BPABPDGDABB
D	kappa	Homo.sapiens	Hu_IGKV6D-21*01	100	Hu_IGKV6D-21*01	62.5	L2	8	L2-8-cis4-*	-1	KYASHAIS	BLPaPBPP
D	kappa	Homo.sapiens	Hu_IGKV6D-21*01	100	Hu_IGKV	-1	L3	9	L3-9-cis7-1	17	QQGHSFPLT	BBDABBpPB
E	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Mo_IGHV3-1*02	78.6	H1	14	H1-14-*	-1	AVSGYSITGGYSWH	BPBLBALDBLBBBB
E	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Mo_IGHV3-1*02	77.8	H2	9	H2-9-1	11	YIHYSGYTD	BBPAALPBB
E	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Mo_IGHV	-1	H3	11	H3-11-*	-1	ARKDPSDAFPY	BBBPAALBBAB
F	kappa	Homo.sapiens	Hu_IGKV6D-21*01	100	Hu_IGKV6D-21*01	72.7	L1	11	L1-11-2	12	RASQSISDHLH	BPABPDLLPBB
F	kappa	Homo.sapiens	Hu_IGKV6D-21*01	100	Hu_IGKV6D-21*01	62.5	L2	8	L2-8-1	10	KYASHAIS	BLLDPPPP
F	kappa	Homo.sapiens	Hu_IGKV6D-21*01	100	Hu_IGKV	-1	L3	9	L3-9-cis7-1	14	QQGHSFPLT	BPDABBpPB
G	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Mo_IGHV3-1*02	78.6	H1	14	H1-14-1	14	AVSGYSITGGYSWH	BBBLBPAAABGBBB
G	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Mo_IGHV3-1*02	77.8	H2	9	H2-9-1	9	YIHYSGYTD	BBPAALPBB
G	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Mo_IGHV	-1	H3	11	H3-11-cis7-*	-1	ARKDPSDAFPY	BBBPAAbPBAB
H	kappa	Homo.sapiens	Hu_IGKV6D-21*01	100	Hu_IGKV6D-21*01	72.7	L1	11	L1-11-1	8	RASQSISDHLH	BPABPDGDPBB
H	kappa	Homo.sapiens	Hu_IGKV6D-21*01	100	Hu_IGKV6D-21*01	62.5	L2	8	L2-8-1	19	KYASHAIS	BLLDBPPP
H	kappa	Homo.sapiens	Hu_IGKV6D-21*01	100	Hu_IGKV	-1	L3	9	L3-9-cis7-1	7	QQGHSFPLT	BBDABPpPB
I	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Mo_IGHV3-1*02	78.6	H1	14	H1-14-cis10-*	-1	AVSGYSITGGYSWH	PPBLBPADAdGBBB
I	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Mo_IGHV3-1*02	77.8	H2	9	H2-9-1	14	YIHYSGYTD	BBPAALPBB
I	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Mo_IGHV	-1	H3	11	H3-11-cis7-*	-1	ARKDPSDAFPY	BPBPAAbPBAB
J	kappa	Homo.sapiens	Hu_IGKV6D-21*01	100	Hu_IGKV6D-21*01	72.7	L1	11	L1-11-1	17	RASQSISDHLH	BBABPDGAPBB
J	kappa	Homo.sapiens	Hu_IGKV6D-21*01	100	Hu_IGKV6D-21*01	62.5	L2	8	L2-8-cis3-*	-1	KYASHAIS	BLdDBPPP
J	kappa	Homo.sapiens	Hu_IGKV6D-21*01	100	Hu_IGKV	-1	L3	9	L3-9-cis7-1	13	QQGHSFPLT	BBDDBPpPB
K	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Mo_IGHV3-1*02	78.6	H1	14	H1-14-1	8	AVSGYSITGGYSWH	BBBLBPADABGBBB
K	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Mo_IGHV3-1*02	77.8	H2	9	H2-9-1	14	YIHYSGYTD	BBPAALPBB
K	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Mo_IGHV	-1	H3	11	H3-11-*	-1	ARKDPSDAFPY	BBBPAALBPAB
L	kappa	Homo.sapiens	Hu_IGKV6D-21*01	100	Hu_IGKV6D-21*01	72.7	L1	11	L1-11-2	7	RASQSISDHLH	BPABPDLLPBB
L	kappa	Homo.sapiens	Hu_IGKV6D-21*01	100	Hu_IGKV6D-21*01	62.5	L2	8	L2-8-1	20	KYASHAIS	BLGAPPPP
L	kappa	Homo.sapiens	Hu_IGKV6D-21*01	100	Hu_IGKV	-1	L3	9	L3-9-cis7-1	13	QQGHSFPLT	BPDABPpPB
M	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Mo_IGHV3-1*02	78.6	H1	14	H1-14-*	-1	AVSGYSITGGYSWH	PBBLBPABLBBBBB
M	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Mo_IGHV3-1*02	77.8	H2	9	H2-9-1	15	YIHYSGYTD	BBPAALPBB
M	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Mo_IGHV	-1	H3	11	H3-11-cis7-*	-1	ARKDPSDAFPY	BBPPAAbBBAB
N	kappa	Homo.sapiens	Hu_IGKV6D-21*01	100	Hu_IGKV6D-21*01	72.7	L1	11	L1-11-1	39	RASQSISDHLH	BPABPPADPBB
N	kappa	Homo.sapiens	Hu_IGKV6D-21*01	100	Hu_IGKV6D-21*01	62.5	L2	8	L2-8-5	37	KYASHAIS	ABLDBPPP
N	kappa	Homo.sapiens	Hu_IGKV6D-21*01	100	Hu_IGKV	-1	L3	9	L3-9-cis7-1	15	QQGHSFPLT	BBDABBpPB
O	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Mo_IGHV3-1*02	78.6	H1	14	H1-14-1	13	AVSGYSITGGYSWH	BPBLBPAAABGBBB
O	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Mo_IGHV3-1*02	77.8	H2	9	H2-9-1	11	YIHYSGYTD	BBPAALPBB
O	heavy	Homo.sapiens	Hu_IGHV4-28*01	91.8	Mo_IGHV	-1	H3	11	H3-11-cis7-*	-1	ARKDPSDAFPY	BPPPAAbBBAB
P	kappa	Homo.sapiens	Hu_IGKV6D-21*01	100	Hu_IGKV6D-21*01	72.7	L1	11	L1-11-1	17	RASQSISDHLH	BPABPDGAPBB
P	kappa	Homo.sapiens	Hu_IGKV6D-21*01	100	Hu_IGKV6D-21*01	62.5	L2	8	L2-8-1	18	KYASHAIS	PLLDBPPP
P	kappa	Homo.sapiens	Hu_IGKV6D-21*01	100	Hu_IGKV	-1	L3	9	L3-9-cis7-1	10	QQGHSFPLT	BBDABBpPB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on November 1, 2019