PyIgClassify: An antibody CDRs clusters web site

Clusters of Antibody CDR Loop Conformations

CDRs for query 3PNW

#CDRs = 6; #Clusters = 7.
Chain	Gene	PDB Species	Frame Germline	Frame %	CDR Germline	CDR %	CDR	Length	Cluster	Distance(°)	Sequence	Ramachandran
A	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1D-39*01	98.5	Hu_IGKV1D-39*01	63.6	L1	11	L1-11-*	-1	RASQSVSSAVA	BPABPBADPBB
A	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1D-39*01	98.5	Hu_IGKV1D-39*01	75	L2	8	L2-8-1	6	YSASSLYS	BLGDPPPP
A	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1D-39*01	98.5	Hu_IGKV	-1	L3	11	L3-11-cis5-*	-1	QQHGPFYWLFT	BBBGpLBPBBB
B	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-64*04	91.8	Hu_IGHV3-64*04	61.5	H1	13	H1-13-1	16	AASGFNLSSSYMH	PPBLBPAAAPPBB
B	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-64*04	91.8	Hu_IGHV3-64*04	70	H2	10	H2-10-1	17	SISSSYGSTY	BBBAAALBBB
B	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-64*04	91.8	Hu_IGHV	-1	H3	19	H3-19-cis10-*	-1	ARTVRGSKKPYFSGWAMDY	BBBPAGDBPpPLLLLPPAB
D	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1D-39*01	98.5	Hu_IGKV1D-39*01	63.6	L1	11	L1-11-1	39	RASQSVSSAVA	BPABPBADPBB
D	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1D-39*01	98.5	Hu_IGKV1D-39*01	75	L2	8	L2-8-1	12	YSASSLYS	BLLDPPPP
D	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1D-39*01	98.5	Hu_IGKV	-1	L3	11	L3-11-cis5-*	-1	QQHGPFYWLFT	BBBGpLBPBBB
E	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-64*04	91.8	Hu_IGHV3-64*04	61.5	H1	13	H1-13-1	13	AASGFNLSSSYMH	PPBLBPAAABPBB
E	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-64*04	91.8	Hu_IGHV3-64*04	70	H2	10	H2-10-1	18	SISSSYGSTY	BBBAAALBBB
E	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-64*04	91.8	Hu_IGHV	-1	H3	19	H3-19-cis10-*	-1	ARTVRGSKKPYFSGWAMDY	BBBPAGDBPpPLLLLPPAB
G	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1D-39*01	98.5	Hu_IGKV1D-39*01	63.6	L1	11	L1-11-*	-1	RASQSVSSAVA	BBABPBADPBB
G	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1D-39*01	98.5	Hu_IGKV1D-39*01	75	L2	8	L2-8-1	8	YSASSLYS	BLGDPPPP
G	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1D-39*01	98.5	Hu_IGKV	-1	L3	11	L3-11-cis5-*	-1	QQHGPFYWLFT	BBBGpLBPBBB
H	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-64*04	91.8	Hu_IGHV3-64*04	61.5	H1	13	H1-13-1	16	AASGFNLSSSYMH	PPBLBPAAABPBB
H	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-64*04	91.8	Hu_IGHV3-64*04	70	H2	10	H2-10-1	15	SISSSYGSTY	BBBAAALBBB
H	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-64*04	91.8	Hu_IGHV	-1	H3	19	H3-19-cis10-*	-1	ARTVRGSKKPYFSGWAMDY	BBBPAGDBPpPLLLLPPAB
J	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1D-39*01	98.5	Hu_IGKV1D-39*01	63.6	L1	11	L1-11-*	-1	RASQSVSSAVA	BBABPBADPBB
J	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1D-39*01	98.5	Hu_IGKV1D-39*01	75	L2	8	L2-8-1	9	YSASSLYS	BLGDPPPP
J	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1D-39*01	98.5	Hu_IGKV	-1	L3	11	L3-11-cis5-*	-1	QQHGPFYWLFT	BBBGpLBPBBB
K	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-64*04	91.8	Hu_IGHV3-64*04	61.5	H1	13	H1-13-1	16	AASGFNLSSSYMH	PBBLBPAAABPBB
K	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-64*04	91.8	Hu_IGHV3-64*04	70	H2	10	H2-10-1	16	SISSSYGSTY	BBBAAALBBB
K	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-64*04	91.8	Hu_IGHV	-1	H3	19	H3-19-cis10-*	-1	ARTVRGSKKPYFSGWAMDY	BBBPAGDBPpPLLLLPPAB
M	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1D-39*01	98.5	Hu_IGKV1D-39*01	63.6	L1	11	L1-11-*	-1	RASQSVSSAVA	BPABPBADPBB
M	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1D-39*01	98.5	Hu_IGKV1D-39*01	75	L2	8	L2-8-1	6	YSASSLYS	BLLDPPPP
M	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1D-39*01	98.5	Hu_IGKV	-1	L3	11	L3-11-cis5-*	-1	QQHGPFYWLFT	BBBGpLBPBBB
N	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-64*04	91.8	Hu_IGHV3-64*04	61.5	H1	13	H1-13-1	13	AASGFNLSSSYMH	PPBLBPAAABPBB
N	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-64*04	91.8	Hu_IGHV3-64*04	70	H2	10	H2-10-1	18	SISSSYGSTY	BBBAADLBBB
N	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-64*04	91.8	Hu_IGHV	-1	H3	19	H3-19-cis10-*	-1	ARTVRGSKKPYFSGWAMDY	BBBPAGDBPpPLLLLPPAB
P	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1D-39*01	98.5	Hu_IGKV1D-39*01	63.6	L1	11	L1-11-*	-1	RASQSVSSAVA	BPABPBADPBB
P	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1D-39*01	98.5	Hu_IGKV1D-39*01	75	L2	8	L2-8-1	8	YSASSLYS	BLGDPPPP
P	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1D-39*01	98.5	Hu_IGKV	-1	L3	11	L3-11-cis5-*	-1	QQHGPFYWLFT	BBBGpLBPBBB
Q	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-64*04	91.8	Hu_IGHV3-64*04	61.5	H1	13	H1-13-1	16	AASGFNLSSSYMH	PPBLBPAAAPPBB
Q	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-64*04	91.8	Hu_IGHV3-64*04	70	H2	10	H2-10-1	16	SISSSYGSTY	BBBAAALBBB
Q	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-64*04	91.8	Hu_IGHV	-1	H3	19	H3-19-cis10-*	-1	ARTVRGSKKPYFSGWAMDY	BBBPAGABPpPLLLLPBAB
S	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1D-39*01	98.5	Hu_IGKV1D-39*01	63.6	L1	11	L1-11-*	-1	RASQSVSSAVA	BPABPBADPBB
S	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1D-39*01	98.5	Hu_IGKV1D-39*01	75	L2	8	L2-8-1	6	YSASSLYS	BLLDPPPP
S	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1D-39*01	98.5	Hu_IGKV	-1	L3	11	L3-11-cis5-*	-1	QQHGPFYWLFT	BBBGpLBPBBB
T	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-64*04	91.8	Hu_IGHV3-64*04	61.5	H1	13	H1-13-1	13	AASGFNLSSSYMH	PPBLBPAAABPBB
T	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-64*04	91.8	Hu_IGHV3-64*04	70	H2	10	H2-10-1	17	SISSSYGSTY	BBBAAALBBB
T	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-64*04	91.8	Hu_IGHV	-1	H3	19	H3-19-cis10-*	-1	ARTVRGSKKPYFSGWAMDY	BBBPAGABPpPLLLLPPAB
V	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1D-39*01	98.5	Hu_IGKV1D-39*01	63.6	L1	11	L1-11-1	39	RASQSVSSAVA	BBABPBADPBB
V	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1D-39*01	98.5	Hu_IGKV1D-39*01	75	L2	8	L2-8-1	7	YSASSLYS	BLGDPPPP
V	kappa	Homo.sapiens.synthetic.construct	Hu_IGKV1D-39*01	98.5	Hu_IGKV	-1	L3	11	L3-11-cis5-*	-1	QQHGPFYWLFT	BBBGpLBPBBB
W	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-64*04	91.8	Hu_IGHV3-64*04	61.5	H1	13	H1-13-1	13	AASGFNLSSSYMH	PPBLBPAAABPBB
W	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-64*04	91.8	Hu_IGHV3-64*04	70	H2	10	H2-10-1	18	SISSSYGSTY	BBBAADLBBB
W	heavy	Homo.sapiens.synthetic.construct	Hu_IGHV3-64*04	91.8	Hu_IGHV	-1	H3	19	H3-19-cis10-*	-1	ARTVRGSKKPYFSGWAMDY	BBBPAGABPpPLLLLPPAB

Site developed by the Antibody Team at the lab of Roland Dunbrack. Last updated on November 1, 2019