|
Column
|
Description
|
Example
|
|
PDBID
|
4-letter PDB code
|
1a0n
|
|
EntityID
|
The entity ID
|
1
|
|
AsymChainIDs
|
The unique asymmetric chain IDs
|
A
|
|
AuthorChainIDs
|
The author-name chain IDs which may be same as water, ligands or other polymers in a PDB file.
|
A
|
|
UnpCode
|
Uniprot Code
|
P85A_HUMAN
|
|
Name
|
The name of protein defined in the PDB
|
P2L
|
|
Sequence
|
amino acid sequence of the entity
|
PPRPLPVAPGSSKT
|
|
SeqLength
|
the length of the sequence
|
14
|
|
HasWeakHits
|
Whether there are weak Pfam hits from HMMER
or hh-suit. T for true, F for false
|
T
|
|
BestWeakEvalue
|
if there are weak hits, the best E-value
|
1.7
|
|
BestWeakPfamID
|
The Pfam of weak hit with best E-value
|
SKI
|
|
Source
|
Which program is used to identify the best Pfam Hit: either from original PDB sequence,
or Psiblast
consensus sequences based on percentage or PSSM (pdbpercent or pdbpssm), or
hidden Markov models (HMMs) of hh-suit (pdbhh)
|
pdbhh (the best weak hit was generated from HHsearch of hh-suit)
|
|
IsVirus
|
Is the protein a virus protein. T for true, F for false
|
F
|
|
Category
|
Whether it is prokaryote or eukaryota
|
Eukaryota
|
|
IsValid
|
A sequence with less than or equal to 5 distinct amino acid types is not valid. e.g. a sequence with all Xs is not valid.
T for true, F for false
|
T
|