Protein Common Interface Database

Clusters with M>=20,SeqId<90 and pair Pfam Architecture

Pfam Architecture	Cluster#	#CFs/Cluster	#Entries/Cluster	#CFs/Group	#Entries/Group	Minimum Seq Identity	Surface Area	In PDBBA(%)	In PISABA(%)	CFs Cluster/Group(%)
(C1-set);(MHC_I)_(C1-set)	1	540	1150	563	1258	10	1065	99	91	96
(C1-set);(MHC_I)_(C1-set)	2	86	219	563	1258	14	462	24	24	15
(C1-set);(MHC_I)_(C1-set)	3	51	76	563	1258	12	529	16	12	9
(C1-set);(MHC_I)_(C1-set)	4	29	64	563	1258	83	263	0	0	5
(AAA_16)_(ORC4_C);(AAA_16)_(ORC5_C)	1	24	24	24	24	10	2674	100	8	100
(AAA_16)_(ORC5_C);(ORC2)	1	23	23	23	23	21	883	100	4	100
(EFTUD2)_(GTP_EFTU)_(GTP_EFTU_D2)_(EFG_III)_(EFG_IV)_(EFG_C) ;(LSM)	1	34	34	34	34	34	490	100	18	100
(eIF-6);(Ribosomal_L14)	1	38	38	38	38	60	833	100	37	100
(eIF-6);(Ribosomal_L3)	1	22	22	22	22	61	253	100	32	100
(Peptidase_M24);(Ribosomal_L23eN)_(Ribosomal_L23)	1	20	20	20	20	26	504	100	30	100
(Ribosomal_L26)_(KOW)_(Ribosomal_L26);(Ribosomal_L29)	1	21	34	23	36	8	342	0	0	91
(Ribosomal_L7Ae);(WD40)_(WD40)	1	21	21	21	21	33	467	100	5	100
(Brix);(Mpp10)	1	25	25	27	27	32	1362	100	4	93
(Brix);(Ribosomal_S9)	1	22	22	22	22	58	312	100	5	100
(EMG1);(Nop14)	1	22	22	22	22	24	1159	100	5	100
(EMG1);(Ribosomal_S7)	1	21	21	21	21	69	384	100	5	100
(Fcf1);(Fibrillarin)	1	24	24	24	24	53	670	100	4	100
(Fcf1);(Ribosomal_S8)	1	23	23	23	23	52	364	100	4	100
(Fcf1);(S4)	1	27	27	27	27	52	847	100	4	100
(Fcf1);(Sas10_Utp3)_(Sas10)	1	24	24	24	24	30	679	100	4	100
(Fcf1);(WD40)_(WD40)_(WD40)_(Sof1)	1	20	20	20	20	49	564	100	5	100
(Fcf2);(Fibrillarin)	1	23	23	23	23	30	1460	100	4	100
(Fibrillarin);(NOP5NT)_(Nop)	1	26	26	26	26	39	1319	100	4	100
(Fibrillarin);(Sas10_Utp3)_(Sas10)	1	23	23	23	23	30	1094	100	4	100
(Fibrillarin);(Utp11)	1	22	22	22	22	29	998	100	5	100
(MMR_HSR1)_(AARP2CN)_(RIBIOP_C);(Mpp10)	1	24	24	24	24	32	1827	100	4	100
(MMR_HSR1)_(AARP2CN)_(RIBIOP_C);(Ribosom_S12_S23)	1	27	27	27	27	49	1252	100	4	100
(MMR_HSR1)_(AARP2CN)_(RIBIOP_C);(RTC)_(RTC_insert)_(RTC)	1	28	28	28	28	37	2704	100	4	100
(NOP5NT)_(Nop);(Ribosomal_L7Ae)	1	26	26	26	26	39	502	100	4	100
(NOP5NT)_(Nop);(U3_assoc_6)_(TPR_14)	1	23	23	23	23	24	768	100	4	100
(NOP5NT)_(Nop);(Utp14)	1	21	21	21	21	28	592	100	5	100
(NOP5NT)_(Nop);(WD40)_(WD40)_(WD40)_(Sof1)	1	23	23	23	23	49	902	100	4	100
(Nrap)_(Nrap_D2)_(Nrap_D3)_(Nrap_D4)_(Nrap_D5)_(Nrap_D6);(RR M_Rrp7)_(RRP7)	1	23	23	23	23	25	2522	100	4	100
(Ribosomal_S28e);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_( WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(Utp12)	1	22	22	22	22	44	607	100	5	100
(Ribosomal_S7);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(UTP15_C)	1	20	20	20	20	30	509	100	5	100
(Ribosomal_S9);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD 40)_(WD40)_(WD40)_(WD40)_(WD40)_(Utp12)	1	21	21	21	21	55	512	100	5	100
(RTC)_(RTC_insert)_(RTC);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_ (WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(Utp12)	1	21	21	21	21	37	473	100	5	100
(S4);(Sas10_Utp3)_(Sas10)	1	22	22	22	22	30	432	100	5	100
(U3_assoc_6)_(TPR_14);(Utp14)	1	21	21	21	21	24	1182	100	5	100
(U3_assoc_6)_(TPR_14);(WD40)_(WD40)	1	20	20	20	20	2	565	100	5	100
(U3_assoc_6)_(TPR_14);(WD40)_(WD40)_(WD40)_(Sof1)	1	20	20	20	20	24	383	100	5	100
(U3_snoRNA_assoc);(Utp11)	1	21	21	21	21	23	600	100	5	100
(Utp14);(WD40)_(WD40)_(WD40)_(Sof1)	1	21	21	21	21	28	2311	100	5	100
(Ribosomal_L29e);(Ribosomal_L30_N)_(Ribosomal_L30)	1	52	52	55	55	82	491	100	2	95
(Ribosomal_L6)_(Ribosomal_L6);(ubiquitin)_(Ribosomal_L40e)	1	91	91	91	91	28	644	99	11	100
(COX1);(COX2_TM)_(COX2)	1	28	102	28	104	15	3554	100	65	100
(COX1);(COX3)	1	28	28	29	96	19	2036	100	39	97
(COX1);(COX7C)	1	21	21	22	88	0	1586	100	29	95
(COX2_TM)_(COX2);(COX6B)	1	20	20	22	88	41	946	100	30	91
(COX3);(COX5B)	1	21	21	22	88	0	938	100	29	95
(COX3);(COX7a)	1	21	21	22	88	0	1285	100	29	95
(Cytochrom_C1);(Cytochrome_B)_(Cytochrom_B_C)	1	55	97	59	106	0	1643	98	68	93
(Cytochrom_C1);(UCR_14kD)	1	39	75	45	85	23	401	100	75	87
(Cytochrom_C1);(UCR_hinge)	1	42	78	45	85	2	1101	100	72	93
(Cytochrom_C1);(UCR_UQCRX_QCR9)	1	39	74	45	85	5	855	100	74	87
(Cytochrom_C1);(UcrQ)	1	40	77	43	83	5	737	100	73	93
(Cytochrome_B)_(Cytochrom_B_C);(Peptidase_M16)_(Peptidase_M1 6_C)	1	40	75	45	85	5	424	100	76	89
(Cytochrome_B)_(Cytochrom_B_C);(UCR_14kD)	1	44	81	45	85	23	1293	98	69	98
(Cytochrome_B)_(Cytochrom_B_C);(UcrQ)	1	42	80	43	83	5	1036	98	71	98
(Peptidase_M16)_(Peptidase_M16_C);(Ubiq-Cytc-red_N)	1	22	45	23	57	6	1656	100	76	96
(Peptidase_M16)_(Peptidase_M16_C);(Ubiq-Cytc-red_N)	2	22	42	23	57	6	940	100	74	96
(Peptidase_M16)_(Peptidase_M16_C);(UCR_14kD)	1	35	57	45	85	21	401	88	68	78
(Peptidase_M16)_(Peptidase_M16_C);(UCR_UQCRX_QCR9)	1	29	49	42	82	26	260	96	69	69
(Peptidase_M16)_(Peptidase_M16_C);(UcrQ)	1	42	78	43	83	21	844	100	72	98
(UCR_14kD);(UcrQ)	1	39	75	43	83	4	466	97	75	91
(Cytochrom_C1);(UCR_TM)_(Rieske)	1	27	57	34	74	0	788	100	74	79
(Cytochrome_B)_(Cytochrom_B_C);(UCR_TM)_(Rieske)	1	27	61	34	74	49	502	100	72	79
(Cytochrome_B)_(Cytochrom_B_C);(UCR_TM)_(Rieske)	2	25	51	34	74	49	829	84	69	74
(Peptidase_M16)_(Peptidase_M16_C);(UCR_TM)_(Rieske)	1	30	60	34	74	28	874	100	70	88
(UCR_TM)_(Rieske);(UCR_UQCRX_QCR9)	1	30	61	34	74	31	633	100	69	88
(UCR_TM)_(Rieske);(UcrQ)	1	27	61	34	74	4	586	100	72	79
(CSN8_PSD8_EIF3K);(PCI)_(Rpn3_C)	1	51	51	51	51	10	1939	100	29	100
(CSN8_PSD8_EIF3K);(RPN1_RPN2_N)_(PC_rep)_(PC_rep)_(PC_rep)_( HEAT_2)_(RPN2_C)	1	31	31	32	32	66	625	100	19	97
(JAB)_(MitMem_reg);(VWA_2)	1	44	44	44	44	4	609	100	20	100
(PCI)_(Rpn3_C);(RPN1_RPN2_N)_(PC_rep)_(PC_rep)_(PC_rep)_(HEA T_2)_(RPN2_C)	1	31	31	32	32	72	594	100	19	97
(RPN6_N)_(PCI)_(RPN6_C_helix);(RPN7)_(PCI)	1	58	58	58	58	37	1413	100	28	100
(CSN8_PSD8_EIF3K);(PCI)_(Rpn9_C)	1	29	29	29	29	31	321	100	38	100
(JAB)_(MitMem_reg);(PCI)_(Rpn9_C)	1	30	30	30	30	31	1614	100	37	100
(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(ZapB)_(Prot_ATP_ID_OB)_( AAA)_(AAA_lid_3)	1	31	31	31	31	37	2701	100	35	100
(CHCH);(MRP-S35)	1	23	23	24	24	85	386	100	9	96
(CHCH);(Ribosomal_S21)	1	24	24	27	27	85	922	100	8	89
(CHCH);(Ribosomal_S6)	1	24	24	24	24	85	508	100	8	100
(CHCH);(Ribosomal_S7)	1	23	23	27	27	85	870	100	9	85
(DAP3);(MRP-S28)	1	23	23	32	32	84	1100	100	9	72
(DAP3);(Ribosomal_S7)	1	24	24	31	31	85	925	100	8	77
(DAP3);(Ribosomal_S9)	1	30	30	37	37	17	1005	100	7	81
(DUF1713);(Ribosomal_S15)	1	24	24	24	24	5	619	100	8	100
(L51_S25_CI-B8);(MRP-S22)	1	24	24	24	24	68	464	100	8	100
(L51_S25_CI-B8);(MRP-S26)	1	24	24	24	24	75	602	100	8	100
(L51_S25_CI-B8);(Ribosomal_S16)	1	24	24	24	24	87	646	100	8	100
(L51_S25_CI-B8);(Ribosomal_S17)	1	24	24	24	24	86	1308	100	8	100
(L51_S25_CI-B8);(Ribosomal_S5)_(Ribosomal_S5_C)	1	24	24	24	24	82	539	100	8	100
(MRP-S22);(MRP-S34)	1	24	24	24	24	5	268	100	8	100
(MRP-S22);(Ribosomal_S16)	1	24	24	24	24	68	1101	100	8	100
(MRP-S22);(Ribosomal_S18)	1	24	24	24	24	11	1984	100	8	100
(MRP-S22);(Ribosomal_S5)_(Ribosomal_S5_C)	1	24	24	24	24	68	1189	100	8	100
(MRP-S23);(MRP-S35)	1	24	24	24	24	82	911	100	8	100
(MRP-S23);(Ribosomal_S18)	1	24	24	24	24	80	456	100	8	100
(MRP-S23);(Ribosomal_S2)	1	24	24	24	24	75	1794	100	8	100
(MRP-S23);(Ribosomal_S5)_(Ribosomal_S5_C)	1	24	24	24	24	82	583	100	8	100
(MRP-S24);(MRP-S28)	1	23	23	23	23	84	1361	100	9	100
(MRP-S24);(MRP-S31)	1	24	24	24	24	75	285	100	8	100
(MRP-S24);(MRP-S33)	1	24	24	24	24	83	543	100	8	100
(MRP-S24);(Ribosomal_S10)	1	24	24	24	24	13	603	100	8	100
(MRP-S24);(Ribosomal_S14)	1	24	24	24	24	86	981	100	8	100
(MRP-S24);(Ribosomal_S5)_(Ribosomal_S5_C)	1	24	24	24	24	82	514	100	8	100
(MRP-S26);(MRP-S34)	1	24	24	24	24	75	751	100	8	100
(MRP-S26);(Ribosomal_S15)	1	24	24	27	27	5	482	100	8	89
(MRP-S26);(Ribosomal_S16)	1	25	25	28	28	4	789	100	8	89
(MRP-S26);(Ribosomal_S17)	1	22	22	22	22	75	269	100	9	100
(MRP-S26);(Ribosomal_S18)	1	24	24	24	24	75	790	100	8	100
(MRP-S26);(Ribosomal_S18)	2	24	24	24	24	3	607	100	8	100
(MRP-S26);(Ribosomal_S6)	1	24	24	27	27	75	911	100	8	89
(MRP-S27);(MRP-S34)	1	22	22	22	22	4	1359	100	9	100
(MRP-S27);(Ribosomal_S18)	1	22	22	22	22	81	304	100	9	100
(MRP-S28);(MRP-S31)	1	23	23	23	23	0	1166	100	9	100
(MRP-S28);(MRP-S33)	1	30	30	30	30	10	689	97	7	100
(MRP-S28);(Ribosomal_S10)	1	23	23	30	30	13	2134	100	9	77
(MRP-S28);(Ribosomal_S9)	1	23	23	30	30	78	1316	100	9	77
(MRP-S31);(MRP-S33)	1	24	24	24	24	75	681	100	8	100
(MRP-S31);(Ribosomal_S10)	1	24	24	24	24	75	249	100	8	100
(MRP-S31);(Ribosomal_S14)	1	24	24	24	24	75	629	100	8	100
(MRP-S33);(Ribosomal_S14)	1	31	31	31	31	22	1206	97	6	100
(MRP-S33);(Ribosomal_S5)_(Ribosomal_S5_C)	1	24	24	24	24	82	1028	100	8	100
(MRP-S34);(Ribosomal_S16)	1	22	22	27	27	82	235	100	9	81
(MRP-S34);(Ribosomal_S18)	1	24	24	24	24	82	785	100	8	100
(MRP-S35);(Ribosomal_S2)	1	24	24	24	24	7	1109	100	8	100
(MRP-S35);(Ribosomal_S21)	1	23	23	24	24	4	704	100	9	96
(Ribosom_S12_S23);(Ribosomal_S17)	1	336	605	406	730	0	221	100	16	83
(Ribosomal_L10);(Ribosomal_L11_N)_(Ribosomal_L11)	1	47	47	88	88	3	269	100	19	53
(Ribosomal_L13);(Ribosomal_L20)	1	444	662	468	690	0	532	100	13	95
(Ribosomal_L13);(Ribosomal_L3)	1	184	250	196	262	3	361	97	8	94
(Ribosomal_L14);(Ribosomal_L19)	1	453	674	479	701	0	798	100	12	95
(Ribosomal_L14);(Ribosomal_L3)	1	192	258	194	260	10	427	97	10	99
(Ribosomal_L16);(Ribosomal_L27)	1	52	164	105	231	7	243	100	3	50
(Ribosomal_L17);(Ribosomal_L3)	1	23	23	36	36	29	634	100	13	64
(Ribosomal_L17);(Ribosomal_L32p)	1	433	650	462	680	0	369	100	12	94
(Ribosomal_L18p);(Ribosomal_L27)	1	24	24	33	34	87	1094	100	12	73
(Ribosomal_L19);(Ribosomal_L3)	1	451	672	478	700	0	722	100	12	94
(Ribosomal_L2)_(Ribosomal_L2_C);(Ribosomal_L9_N)_(Ribosomal_ L9_C)	1	78	78	149	163	40	236	100	17	52
(Ribosomal_L2)_(Ribosomal_L2_C);(Ribosomal_S6)	1	24	24	38	45	0	309	96	4	63
(Ribosomal_L20);(Ribosomal_L21p)	1	449	671	472	695	0	976	100	12	95
(Ribosomal_L22);(Ribosomal_L32p)	1	454	676	477	700	0	466	100	13	95
(Ribosomal_L27A);(Ribosomal_L35p)	1	430	644	462	684	0	801	100	11	93
(Ribosomal_L27A);(Ribosomal_L4)	1	458	658	490	711	0	486	100	13	93
(Synaptobrevin);(Syntaxin)_(SNARE)	1	26	29	26	30	0	1402	100	72	100
(Ribosomal_L28);(Ribosomal_L9_N)_(Ribosomal_L9_C)	1	265	447	336	525	0	233	100	10	79
(Ribosomal_L28);(Ribosomal_L9_N)_(Ribosomal_L9_C)	2	25	25	336	525	8	1401	100	12	7
(Ribosomal_S10);(Ribosomal_S14)	1	610	914	629	961	0	788	99	13	97
(Ribosomal_S10);(Ribosomal_S9)	1	36	36	61	68	13	399	100	6	59
(Ribosomal_S11);(Ribosomal_S18)	1	96	285	156	460	3	315	100	6	62
(Ribosomal_S11);(Ribosomal_S18)	2	26	107	156	460	27	311	100	2	17
(Ribosomal_S11);(Ribosomal_S21)	1	288	313	319	347	0	1069	100	13	90
(Ribosomal_S11);(Ribosomal_S7)	1	297	559	393	709	0	243	100	15	76
(Ribosomal_S15);(Ribosomal_S17)	1	25	25	34	34	2	358	100	8	74
(Ribosomal_S15);(Ribosomal_S6)	1	27	27	37	37	2	376	100	7	73
(Ribosomal_S16);(Ribosomal_S18)	1	25	25	25	25	84	585	100	8	100
(Ribosomal_S18);(Ribosomal_S21)	1	144	168	201	228	0	291	99	13	72
(Ribosomal_S18);(Ribosomal_S5)_(Ribosomal_S5_C)	1	25	25	25	25	7	582	100	8	100
(Ribosomal_S18);(Ribosomal_S6)	1	430	726	449	775	0	898	100	10	96
(Ribosomal_S2);(Ribosomal_S21)	1	20	20	21	21	75	245	100	10	95
(Ribosomal_S2);(Ribosomal_S5)_(Ribosomal_S5_C)	1	72	78	83	89	6	510	91	13	87
(Ribosomal_S2);(Ribosomal_S9)	1	34	34	34	34	24	1165	97	6	100
(Ribosomal_S21);(Ribosomal_S6)	1	21	21	27	27	19	223	100	10	78
(Ribosomal_S21);(Ribosomal_S9)	1	20	20	21	21	78	237	100	10	95
(ATP-synt_8);(ATP-synt_A)	1	25	25	25	25	4	927	100	24	100
(ATP-synt_A);(WRW)	1	20	20	25	25	32	691	100	25	80
(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C);(IATP)	1	23	23	23	23	16	684	100	17	100
(ATP-synt_E);(ATP-synt_G)	1	20	20	20	20	88	646	100	30	100
(Ribosomal_S7);(Ribosomal_S9)	1	542	813	624	932	0	427	99	11	87
(Ribosomal_S7);(Ribosomal_S9)	2	28	28	624	932	78	1420	100	7	4
(Mt_ATP-synt_B);(WRW)	1	20	20	25	25	1	557	100	30	80
(ATP-synt);(ATP-synt_DE_N)_(ATP-synt_DE)	1	56	67	61	72	5	1263	100	42	92
(ATP-synt_C);(ATP-synt_DE_N)_(ATP-synt_DE)	1	22	23	30	31	5	248	96	4	73
(ATP-synt_C);(ATP-synt_DE_N)_(ATP-synt_DE)	2	21	22	30	31	17	250	95	5	70
(Ribosomal_L13);(Ribosomal_L14e)	1	26	26	26	26	4	926	100	12	100
(eIF-1a);(Ribosom_S12_S23)	1	33	33	33	33	8	388	97	18	100
(7tm_1);(G-alpha)	1	81	81	180	180	2	1197	100	2	45
(7tm_1);(G-alpha)	2	25	25	180	180	21	1127	100	0	14
(G-alpha);(V-set)_(V-set)	1	87	87	148	148	43	532	100	0	59
(G-alpha);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	1	160	161	227	228	4	1261	100	4	70
(G-gamma);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	1	169	178	236	246	0	2083	100	11	72
(G-alpha);(V-set)	1	104	104	113	113	1	828	99	1	92
(G-alpha);(ZapB)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	1	54	54	61	61	24	1360	98	4	89
(GP120);(ig)_(C2-set)	1	30	39	30	43	21	1030	100	33	100
(Ribosomal_L16);(Ribosomal_L25p)	1	288	316	308	336	21	386	100	13	94
(Ribosomal_L23);(Ribosomal_L29)	1	432	708	455	737	0	492	100	11	95
(Ribosomal_L31);(Ribosomal_L5)_(Ribosomal_L5_C)	1	221	390	260	438	0	978	100	11	85
(RuBisCO_large_N)_(RuBisCO_large);(RuBisCO_small)	1	22	45	29	68	11	1324	100	73	76
(RNA_pol_I_A49);(RNA_polI_A34)	1	31	35	31	35	38	2028	100	83	100
(MMS1_N)_(CPSF_A);(SF3b10)	1	25	29	25	29	22	1701	100	34	100
(MCM_N)_(MCM_OB)_(MCM)_(MCM_lid);(MCM_N)_(MCM_OB)_(MCM)_(MCM _lid)_(MCM6_C)	1	25	25	27	27	44	3510	100	32	93
(MCM_N)_(MCM_OB)_(MCM)_(MCM_lid);(MCM2_N)_(MCM_N)_(MCM_OB)_( MCM)_(MCM_lid)	1	25	25	28	28	30	3044	100	52	89
(MCM_N)_(MCM_OB)_(MCM)_(MCM_lid)_(MCM6_C);(MCM2_N)_(MCM_N)_( MCM_OB)_(MCM)_(MCM_lid)	1	30	30	32	32	33	2870	100	43	94
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_Rpb1 _4)_(RNA_pol_Rpb1_5)	1	149	186	163	203	33	999	100	37	91
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2 _2)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA _pol_Rpb2_7)	1	68	68	71	71	42	1708	100	16	96
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2 _2)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA _pol_Rpb2_7)	2	66	66	71	71	42	305	100	17	93
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_( RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_3)_(RNA_pol_R pb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	77	94	79	96	42	8097	100	12	97
(KH_2)_(Ribosomal_S3_C);(Stm1_N)_(HABP4_PAI-RBP1)	1	24	37	24	37	4	801	41	5	100
(Ribosomal_L5)_(Ribosomal_L5_C);(Stm1_N)_(HABP4_PAI-RBP1)	1	24	37	24	37	74	571	41	5	100
(Ribosomal_S13);(Stm1_N)_(HABP4_PAI-RBP1)	1	24	37	24	37	74	533	41	5	100
(Ribosomal_S19);(Stm1_N)_(HABP4_PAI-RBP1)	1	24	37	24	37	10	418	41	5	100
(Ribosomal_S5)_(Ribosomal_S5_C);(Stm1_N)_(HABP4_PAI-RBP1)	1	24	37	24	37	74	252	41	5	100
(Ribosomal_L14);(Ribosomal_L24e)	1	184	251	184	251	0	529	97	10	100
(KH_2)_(Ribosomal_S3_C);(Ribosomal_S10)	1	558	862	587	919	0	409	99	11	95
(KH_2)_(Ribosomal_S3_C);(Ribosomal_S14)	1	566	894	586	918	0	780	99	13	97
(KH_2)_(Ribosomal_S3_C);(Ribosomal_S17e)	1	183	189	187	193	2	493	96	8	98
(KH_2)_(Ribosomal_S3_C);(S10_plectin)	1	177	183	177	183	0	879	96	7	100
(KH_2)_(Ribosomal_S3_C);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_( WD40)_(WD40)	1	159	165	161	167	3	491	96	7	99
(Ribosomal_L7Ae);(S10_plectin)	1	21	21	26	26	20	288	90	5	81
(Ribosomal_S13);(Ribosomal_S19)	1	588	911	610	942	0	426	99	10	96
(Ribosomal_S13);(Ribosomal_S19e)	1	189	195	193	199	4	443	96	11	98
(Ribosomal_S13);(Ribosomal_S25)	1	175	181	177	183	0	461	96	9	99
(Ribosomal_S14);(Ribosomal_S19)	1	255	283	300	329	6	335	100	13	85
(Ribosomal_S14);(S10_plectin)	1	165	171	168	174	0	297	95	7	98
(Ribosomal_S17e);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_( WD40)	1	167	173	167	173	10	524	96	9	100
(Ribosomal_S19e);(Ribosomal_S9)	1	128	128	136	136	2	282	98	12	94
(Ribosomal_S25);(Ribosomal_S7)	1	184	190	184	190	2	594	96	9	100
(Ribosomal_S28e);(Ribosomal_S7)	1	225	231	225	231	0	1099	97	10	100
(Ribosomal_S5)_(Ribosomal_S5_C);(Ribosomal_S8)	1	600	899	618	950	0	579	99	12	97
(Ribosomal_S9);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD 40)	1	160	166	161	167	10	299	96	8	99
(Ribosomal_L7Ae);(ubiquitin)_(Ribosomal_S27)	1	96	96	100	100	5	592	99	7	96
(Ribosomal_S2);(Ribosomal_S8)	1	84	356	90	387	82	258	100	5	93
(Fibrillarin);(Ribosomal_L7Ae)	1	22	22	27	30	61	456	100	5	81
(Ribosomal_L31);(Ribosomal_S13)	1	151	309	197	367	0	399	100	12	77
(Ribosomal_L31);(Ribosomal_S19)	1	156	291	200	357	5	436	100	12	78
(Ribosomal_L5)_(Ribosomal_L5_C);(Ribosomal_S13)	1	215	355	384	566	24	273	100	10	56
(Ribosomal_L5)_(Ribosomal_L5_C);(Ribosomal_S13)	2	60	60	384	566	58	282	98	0	16
(Ribosomal_L5)_(Ribosomal_L5_C);(Ribosomal_S13)	3	46	72	384	566	4	307	100	1	12
(Ribosomal_S4)_(S4);(Ribosomal_S5)_(Ribosomal_S5_C)	1	328	624	401	727	0	321	100	15	82
(Ribosomal_S4)_(S4);(Ribosomal_S6)	1	26	61	60	146	28	386	11	0	43
(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C);(ATP-synt_ab_N )_(ATP-synt_ab)_(T3SS_ATPase_C)	1	164	172	164	173	18	2074	100	52	100
(DNA_RNApol_7kD);(RNA_pol_A_bac)	1	117	237	121	249	0	584	100	58	97
(DNA_RNApol_7kD);(RNA_pol_N)	1	25	29	65	118	30	202	100	66	38
(DNA_RNApol_7kD);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_ Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_( RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	81	205	84	208	21	1008	100	53	96
(RNA_pol_A_bac);(RNA_pol_L_2)	1	116	238	121	249	4	2037	100	65	96
(RNA_pol_A_bac);(RNA_pol_N)	1	117	237	121	249	20	1111	100	70	97
(RNA_pol_A_bac);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_R pb1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(R NA_pol_Rpb1_5)_(RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5)	1	47	135	57	179	49	363	100	50	82
(RNA_pol_A_bac);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_R pb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(R NA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	69	185	72	196	42	1684	99	70	96
(RNA_pol_L_2);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb 1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA _pol_Rpb1_5)_(RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5)	1	69	193	72	196	35	963	99	46	96
(RNA_pol_L_2);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb 2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA _pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	77	199	82	206	21	451	99	63	94
(RNA_POL_M_15KD)_(TFIIS_C);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2) _(RNA_pol_Rpb1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol _Rpb1_6)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5)	1	69	193	72	196	45	1534	99	69	96
(RNA_POL_M_15KD)_(TFIIS_C);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2) _(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol _Rpb2_5)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	79	203	82	206	25	1327	100	52	96
(RNA_pol_N);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_ 1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA_p ol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	80	204	84	208	38	1528	100	70	95
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb2_1)_(RNA_pol_R pb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(R NA_pol_Rpb2_5)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	70	194	73	197	52	9001	99	55	96
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb5_N)_(RNA_pol_R pb5_C)	1	70	194	73	197	5	2122	99	69	96
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb6)	1	69	191	73	197	4	1905	99	68	95
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb8)	1	69	193	73	197	35	1525	99	68	95
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(SHS2_Rpb7-N)_(S1)	1	62	115	66	119	5	591	99	48	94
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA_pol_Rpb2_6)_( RNA_pol_Rpb2_7);(RNA_pol_Rpb4)	1	21	67	41	92	51	289	99	45	51
(RNA_pol_Rpb4);(SHS2_Rpb7-N)_(S1)	1	73	125	77	131	1	2003	99	47	95
(RNA_pol_Rpb6);(SHS2_Rpb7-N)_(S1)	1	69	120	73	127	4	434	98	44	95
(Histone);(Histone)_(Histone_H2A_C)	1	278	428	285	489	6	2420	99	54	98
(Histone);(Histone)_(Histone_H2A_C)	2	253	365	285	489	23	661	99	51	89
(Histone);(TAF)	1	286	413	298	509	12	2436	100	54	96
(Histone);(TAF)	2	261	379	298	509	2	415	100	51	88
(Histone)_(Histone_H2A_C);(TAF)	1	257	381	265	468	11	412	99	51	97
(NusG)_(KOW);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1 _3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)	1	34	34	34	34	4	662	100	6	100
(Adaptin_N);(Clat_adaptor_s)	1	31	34	34	37	6	2534	100	53	91
(Adaptin_N);(Clat_adaptor_s)_(Adap_comp_sub)	1	23	26	27	30	40	3070	100	50	85
(Alpha_E1_glycop);(Alpha_E2_glycop)	1	20	22	24	26	33	1154	100	18	83
(Alpha_E1_glycop);(Alpha_E2_glycop)_(Alpha_E1_glycop)	1	27	27	27	27	15	2658	100	0	100
(Alpha_E1_glycop);(Alpha_E2_glycop)_(Alpha_E1_glycop)	2	23	23	27	27	15	542	100	0	85
(Aminotran_1_2);(SPT_ssu-like)	1	21	21	21	21	35	890	100	0	100
(ubiquitin);(UQ_con)	1	32	33	71	83	23	807	100	55	45
(ANF_receptor)_(Lig_chan-Glu_bd)_(Lig_chan)_(CaM_bdg_C0);(AN F_receptor)_(Lig_chan-Glu_bd)_(Lig_chan)_(NMDAR2_C)	1	25	25	26	26	57	2106	100	0	96
(Kinesin);(Tubulin)_(Tubulin_C)	1	46	46	88	88	23	671	100	17	52
(Kinesin);(Tubulin)_(Tubulin_C)	2	33	33	88	88	23	780	97	33	38
(Skp1_POZ);(ubiquitin)	1	43	103	43	107	2	943	99	76	100
(Thrombin_light);(Trypsin)	1	96	364	96	447	9	1153	100	99	100
(ubiquitin);(UCH)	1	25	32	28	41	4	1692	100	97	89
(APG6_N)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Prot_ATP_ID_OB) _(AAA)_(AAA_lid_3)	1	29	29	29	29	38	2645	100	24	100
(APG6_N)_(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Proteasome_A_N) _(Proteasome)	1	21	21	23	23	36	370	100	19	91
(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Proteasome_A_N)_(Proteas ome)	1	48	48	52	52	26	395	100	29	92
(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Proteasome_A_N)_(Proteas ome)	2	48	48	52	52	31	392	100	27	92
(Prot_ATP_ID_OB)_(AAA)_(AAA_lid_3);(Proteasome_A_N)_(Proteas ome)	3	43	43	52	52	60	483	100	30	83
(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C);(OSCP)	1	73	73	131	131	13	749	100	51	56
(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C);(OSCP)	2	71	71	131	131	13	1199	100	63	54
(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C);(OSCP)	3	66	66	131	131	12	599	100	9	50
(CSN8_PSD8_EIF3K);(JAB)_(MitMem_reg)	1	33	33	57	58	31	316	100	27	58
(DSS1_SEM1);(PCI)_(Rpn3_C)	1	24	24	41	41	34	965	100	0	59
(DSS1_SEM1);(RPN7)_(PCI)	1	32	32	57	57	0	952	100	3	56
(DSS1_SEM1);(RPN7)_(PCI)	2	25	25	57	57	37	851	100	56	44
(JAB)_(MitMem_reg);(PCI)_(Rpn3_C)	1	39	39	52	52	31	789	100	18	75
(JAB)_(MitMem_reg);(RPN6_N)_(PCI)_(RPN6_C_helix)	1	27	27	58	58	43	590	100	37	47
(JAB)_(MitMem_reg);(RPN6_N)_(PCI)_(RPN6_C_helix)	2	23	23	58	58	43	510	100	26	40
(JAB)_(MitMem_reg);(RPN6_N)_(PCI)_(RPN6_C_helix)	3	22	22	58	58	43	507	100	0	38
(JAB)_(MitMem_reg);(RPN6_N)_(PCI)_(RPN6_C_helix)	4	20	20	58	58	43	485	100	0	34
(JAB)_(MitMem_reg);(RPN7)_(PCI)	1	48	49	62	63	4	426	100	18	77
(PCI)_(Rpn3_C);(RPN7)_(PCI)	1	51	51	51	51	27	1261	100	29	100
(ATP-synt_A);(Mt_ATP-synt_B)	1	32	32	39	39	6	713	100	19	82
(ATP-synt_A);(Mt_ATP-synt_D)	1	22	22	32	32	85	360	100	27	69
(Ribosomal_L14e);(Ribosomal_L18A)	1	25	25	27	27	14	1066	100	8	93
(Ribosomal_L24e);(Ribosomal_S6e)	1	82	95	93	106	1	801	76	2	88
(eIF-5_eIF-2B);(GTP_EFTU)_(GTP_EFTU_D2)_(eIF2_C)	1	22	23	23	24	8	835	100	43	96
(MHC_I)_(C1-set);(V-set)_(C1-set)	1	100	200	133	253	24	451	98	50	75
(MHC_I)_(C1-set);(V-set)_(DUF1968)	1	111	227	119	238	36	482	95	52	93
(V-set)_(C1-set);(V-set)_(DUF1968)	1	270	504	271	517	7	1922	100	91	100
(V-set);(V-set)_(C1-set)	1	25	30	65	87	10	530	80	27	38
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb6)	1	245	315	255	325	9	1536	100	48	96
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(Sigma70_r1_1)_(Sigma70_r1_2)_(Sigm a70_ner)_(Sigma70_r2)_(Sigma70_r3)_(Sigma70_r4)	1	52	74	55	78	47	2751	100	43	95
(Oxidored_q2);(Proton_antipo_M)	1	22	27	22	27	5	1531	100	44	100
(Oxidored_q3);(Proton_antipo_M)	1	20	25	20	25	0	1098	100	48	100
(Mt_ATP-synt_B);(Mt_ATP-synt_D)	1	47	47	48	48	3	1505	100	32	98
(ATP-synt_F6);(Mt_ATP-synt_B)	1	21	21	29	29	4	1274	100	33	72
(Cation_ATPase_N)_(E1-E2_ATPase)_(Cation_ATPase)_(Cation_ATP ase_C);(Na_K-ATPase)	1	33	72	33	79	30	2034	100	67	100
(CR6_interact);(MRP-L51)	1	30	33	30	39	76	423	100	12	100
(CR6_interact);(Ribosomal_L27A)	1	29	32	29	38	76	1065	100	12	100
(CR6_interact);(Ribosomal_L28)	1	29	32	29	38	76	384	100	12	100
(CR6_interact);(Ribosomal_L33)	1	29	32	29	38	76	481	100	12	100
(CR6_interact);(Ribosomal_L4)	1	29	32	29	38	76	459	100	12	100
(Img2);(MRP-63)	1	30	33	30	39	72	594	100	12	100
(Img2);(Ribosomal_L27A)	1	29	32	34	43	87	1377	100	12	85
(Img2);(Ribosomal_L4)	1	39	42	44	53	4	824	98	12	89
(KOW)_(ribosomal_L24);(MRP-L27)	1	30	33	30	39	22	1353	100	12	100
(KOW)_(ribosomal_L24);(MRP-L47)	1	36	39	36	45	7	1700	100	13	100
(KOW)_(ribosomal_L24);(Ribosomal_L23)	1	31	34	36	45	81	786	100	15	86
(L51_S25_CI-B8);(MRP-63)	1	30	33	30	39	72	370	100	12	100
(L51_S25_CI-B8);(MRP-S32)	1	30	33	30	39	8	669	100	15	100
(L51_S25_CI-B8);(Ribonucleas_3_3)_(dsrm)	1	30	33	34	43	88	1492	100	15	88
(L51_S25_CI-B8);(Ribosomal_L13)	1	39	42	43	52	18	783	98	12	91
(L51_S25_CI-B8);(Ribosomal_L20)	1	31	34	31	40	22	595	100	12	100
(L51_S25_CI-B8);(Ribosomal_L21p)	1	41	44	45	54	0	1286	98	11	91
(L51_S25_CI-B8);(Ribosomal_L50)	1	30	33	39	48	80	687	100	15	77
(Mitoc_L55);(MRP-L28)	1	28	31	28	37	70	830	100	13	100
(Mitoc_L55);(MRP-L46)	1	28	31	28	37	70	1214	100	13	100
(Mitoc_L55);(Ribosomal_S10)	1	28	31	28	37	70	923	100	13	100
(MRP_L53);(Ribosomal_L10)	1	29	32	29	38	85	844	100	12	100
(MRP_L53);(Ribosomal_S18)	1	30	33	30	39	85	509	100	12	100
(MRP-63);(MRPL52)	1	30	33	30	39	72	385	100	12	100
(MRP-63);(Ribosomal_L10)	1	29	32	29	38	72	497	100	12	100
(MRP-63);(Ribosomal_L16)	1	29	32	29	38	72	323	100	12	100
(MRP-63);(Ribosomal_L27A)	1	29	32	29	38	72	521	100	12	100
(MRP-63);(Ribosomal_L30)	1	29	32	29	38	72	1222	100	12	100
(MRP-63);(Ribosomal_S18)	1	24	24	24	30	72	250	100	4	100
(MRP-L27);(MRP-L47)	1	36	39	40	49	22	1651	100	13	90
(MRP-L27);(Ribosomal_L23)	1	38	41	38	47	5	1457	98	12	100
(MRP-L27);(Ribosomal_L28)	1	29	32	29	38	77	503	100	12	100
(MRP-L27);(Ribosomal_L34)	1	38	41	38	47	22	438	98	12	100
(MRP-L28);(MRP-L46)	1	35	38	35	44	11	2236	100	16	100
(MRP-L28);(Ribosomal_S10)	1	30	33	30	39	72	1740	100	15	100
(MRP-L46);(Ribosomal_S10)	1	30	33	30	39	76	361	100	15	100
(MRP-L47);(MRP-L51)	1	29	32	29	38	82	234	100	12	100
(MRP-L47);(PDCD9)	1	29	32	29	38	83	561	100	12	100
(MRP-L47);(Ribosomal_L23)	1	45	48	45	54	2	1785	98	12	100
(MRP-L47);(Ribosomal_L28)	1	30	33	30	39	83	451	100	15	100
(MRP-L47);(Ribosomal_L34)	1	30	33	30	39	83	518	100	15	100
(MRP-L51);(Ribonucleas_3_3)_(dsrm)	1	30	33	30	39	82	368	100	12	100
(MRP-L51);(Ribosomal_L27A)	1	29	32	29	38	82	290	100	12	100
(MRP-L51);(Ribosomal_L28)	1	29	32	29	38	82	326	100	12	100
(MRP-L51);(Ribosomal_L35p)	1	29	32	29	38	80	399	100	12	100
(MRP-L51);(Ribosomal_L4)	1	29	32	29	38	82	1829	100	12	100
(MRPL52);(Ribosomal_L20)	1	29	32	29	38	81	394	100	12	100
(MRPL52);(Ribosomal_L21p)	1	31	34	31	40	7	668	100	12	100
(MRPL52);(Ribosomal_L30)	1	29	32	31	40	81	1056	100	12	94
(MRP-S32);(Ribonucleas_3_3)_(dsrm)	1	29	32	29	38	69	680	100	16	100
(MRP-S32);(Ribosomal_L13)	1	29	32	29	38	30	294	100	12	100
(MRP-S32);(Ribosomal_L20)	1	28	31	28	37	69	866	100	13	100
(MRP-S32);(Ribosomal_L21p)	1	28	31	28	37	69	809	100	13	100
(MRP-S32);(Ribosomal_L22)	1	29	32	29	38	69	413	100	12	100
(PBP);(RF-1)	1	31	34	31	40	77	958	100	12	100
(PBP);(Ribosomal_L18p)	1	30	33	30	39	88	2744	100	12	100
(PBP);(Ribosomal_L27)	1	29	32	36	45	87	1811	100	12	81
(PBP);(Ribosomal_L27A)	1	29	32	34	43	88	255	100	12	85
(PBP);(Ribosomal_L35p)	1	29	32	29	38	80	1116	100	12	100
(PBP);(Ribosomal_S10)	1	30	33	30	39	76	644	100	12	100
(PDCD9);(Ribosomal_L17)	1	27	30	27	36	82	368	100	13	100
(PDCD9);(Ribosomal_L2)_(Ribosomal_L2_C)	1	29	32	29	38	85	777	100	12	100
(PDCD9);(Ribosomal_L23)	1	29	32	29	38	81	532	100	12	100
(PDCD9);(Ribosomal_L28)	1	29	32	29	38	83	825	100	12	100
(RF-1);(Ribosomal_L18p)	1	28	31	28	37	77	446	100	13	100
(RF-1);(Ribosomal_L27A)	1	30	33	30	39	77	1553	100	12	100
(Ribonucleas_3_3)_(dsrm);(Ribosomal_L13)	1	33	36	33	42	14	807	97	11	100
(Ribonucleas_3_3)_(dsrm);(Ribosomal_L20)	1	29	32	29	38	87	374	100	12	100
(Ribonucleas_3_3)_(dsrm);(Ribosomal_L21p)	1	29	32	29	38	77	319	100	12	100
(Ribosomal_L10);(Ribosomal_L16)	1	32	35	32	41	85	1231	100	14	100
(Ribosomal_L10);(Ribosomal_S18)	1	29	32	30	39	85	236	100	9	97
(Ribosomal_L13);(Ribosomal_L22)	1	43	46	48	57	21	523	98	13	90
(Ribosomal_L13);(Ribosomal_S18)	1	30	33	30	39	85	2360	100	12	100
(Ribosomal_L16);(Ribosomal_L30)	1	31	34	31	40	81	427	100	15	100
(Ribosomal_L16);(Ribosomal_L37)	1	27	29	28	37	20	393	100	10	96
(Ribosomal_L17);(Ribosomal_L19)	1	29	32	29	38	80	637	100	16	100
(Ribosomal_L17);(TGS)_(tRNA_SAD)	1	27	30	27	36	89	746	100	13	100
(Ribosomal_L20);(Ribosomal_L22)	1	31	34	31	40	86	273	100	15	100
(Ribosomal_L21p);(Ribosomal_S18)	1	30	33	30	39	77	526	100	12	100
(Ribosomal_L22);(TGS)_(tRNA_SAD)	1	30	33	30	39	78	357	100	12	100
(Ribosomal_L27);(Ribosomal_S10)	1	30	33	30	39	76	395	100	12	100
(Ribosomal_L3);(TGS)_(tRNA_SAD)	1	30	33	30	39	82	575	100	12	100
(Ribosomal_L32p);(TGS)_(tRNA_SAD)	1	29	32	29	38	85	256	100	12	100
(Ribosomal_L4);(Ribosomal_L50)	1	29	32	38	47	80	1054	100	12	76
(Fer4_7);(PsaA_PsaB)	1	34	39	35	40	0	802	100	38	97
(Fer4_7);(PsaA_PsaB)	2	34	39	35	40	3	407	100	36	97
(bCoV_S1_N)_(bCoV_S1_RBD);(Peptidase_M2)	1	28	36	29	37	8	779	100	33	97
(bCoV_S1_N)_(bCoV_S1_RBD);(V-set)_(C1-set)	1	64	89	131	185	5	509	47	22	49
(bCoV_S1_N)_(bCoV_S1_RBD);(V-set)_(C1-set)	2	32	39	131	185	8	694	100	36	24
(bCoV_S1_N)_(bCoV_S1_RBD);(V-set)_(C1-set)	3	30	37	131	185	8	455	100	46	23
(bCoV_S1_N)_(bCoV_S1_RBD);(V-set)_(C1-set)	4	24	29	131	185	3	352	93	28	18
(V-set)_(C1-set);(V-set)_(C1-set)_(C1-set)_(C1-set)	1	50	50	62	62	24	1409	100	16	81
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C);(Peptidase_M2)	1	20	29	24	33	9	867	100	41	83
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C)_(CoV_S2);(V-set)_(C1-se t)	1	42	42	215	215	12	593	100	5	20
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C)_(CoV_S2);(V-set)_(C1-se t)	2	31	31	215	215	12	546	100	10	14
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C)_(CoV_S2);(V-set)_(C1-se t)	3	28	28	215	215	12	688	100	21	13
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C)_(CoV_S2);(V-set)_(C1-se t)	4	27	27	215	215	13	519	100	4	13
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C)_(CoV_S2);(V-set)_(C1-se t)	5	24	24	215	215	12	554	100	8	11
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C)_(CoV_S2);(V-set)_(C1-se t)	6	24	24	215	215	12	402	100	0	11
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C)_(CoV_S2);(Peptidase_M2)	1	62	62	85	85	11	1082	100	2	73
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C)_(CoV_S2);(V-set)	1	64	64	209	209	11	478	100	6	31
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C)_(CoV_S2);(V-set)	2	34	34	209	209	12	431	100	9	16
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C)_(CoV_S2);(V-set)	3	28	28	209	209	12	388	100	0	13
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C)_(CoV_S2);(V-set)	4	25	25	209	209	12	608	100	4	12
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C)_(CoV_S2);(V-set)	5	23	23	209	209	12	503	100	4	11
(bCoV_S1_N)_(bCoV_S1_RBD)_(CoV_S1_C)_(CoV_S2);(V-set)	6	22	22	209	209	12	416	100	18	11
(Skp1_POZ);(VHL)_(VHL_C)	1	22	74	22	80	4	1004	100	77	100
(LRR_9);(RRM_1)	1	23	23	23	23	24	549	100	13	100
(KOW)_(Ribosomal_L14e);(Ribosomal_L6e)	1	101	114	101	114	2	491	82	15	100
(Ribosomal_L18A);(Ribosomal_L4)_(Ribos_L4_asso_C)	1	93	106	95	108	35	243	80	14	98
(Ribosomal_L26)_(KOW)_(Ribosomal_L26);(Ribosomal_L4)_(Ribos_ L4_asso_C)	1	30	30	33	33	47	219	90	17	91
(Ribosomal_L32e);(Ribosomal_L6e)	1	95	108	95	108	2	511	81	15	100
(Ribosomal_L35Ae);(Ribosomal_L6e)	1	108	121	108	121	2	859	83	15	100
(Ribosomal_S17e);(Ribosomal_S2)	1	74	87	74	87	2	955	75	8	100
(Ribosomal_S2);(Ribosomal_S21e)	1	75	88	75	88	0	1506	75	9	100
(GP120);(GP41)	1	122	136	122	140	0	2033	99	28	100
(GP120);(V-set)_(C1-set)	1	52	72	226	288	16	267	100	57	23
(GP120);(V-set)_(C1-set)	2	37	48	226	288	12	893	100	46	16
(GP120);(V-set)_(C1-set)	3	24	34	226	288	19	316	94	15	11
(GP120);(V-set)_(C1-set)	4	24	34	226	288	58	296	94	18	11
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5)_(RNA_pol_Rpb1_6)_(RNA_pol_Rpb1_5)_( RNA_pol_Rpb1_7)_(RNA_pol_Rpb1_5);(TF_Zn_Ribbon)_(TFIIB)_(TFI IB)	1	23	26	23	26	33	2087	100	19	100
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_5)_(RNA_pol_Rpb2_6)_( RNA_pol_Rpb2_7);(TF_Zn_Ribbon)_(TFIIB)_(TFIIB)	1	23	26	23	26	33	1743	100	15	100
(F_actin_cap_B);(F-actin_cap_A)	1	24	28	24	28	10	3543	100	75	100
(Pico_P1A);(Rhv)	1	151	236	158	252	0	923	100	38	96
(Pico_P1A);(Rhv)	2	132	204	158	252	0	565	100	34	84
(C1-set);(MHC_I_3)_(C1-set)	1	47	151	47	156	11	1232	100	96	100
(G-alpha);(HRM)_(7tm_2)	1	67	67	67	67	2	1039	100	0	100
(HRM)_(7tm_2);(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)	1	24	24	31	31	25	259	100	0	77
(Calici_coat);(CRPV_capsid)	1	24	24	25	25	7	3446	100	33	96
(Calici_coat);(Rhv)	1	23	24	23	24	10	1159	100	33	100
(CRPV_capsid);(Rhv)	1	21	21	25	25	6	1297	100	29	84
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(Sigma70_r1_2)_(Sigma70_r2)_(Sigma7 0_r3)_(Sigma70_r4)	1	20	54	20	54	35	2595	100	46	100
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2 _3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	1	62	120	70	128	30	1832	100	72	89
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L)_(RNA_pol_A_CTD);(RNA _pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2 _3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7)	2	56	113	70	128	30	287	100	75	80
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_(RNA_pol_Rpb2_7); (RNA_pol_Rpb6)	1	40	79	61	121	10	214	100	61	66
(MHC_II_alpha)_(C1-set);(MHC_II_beta)_(C1-set)	1	159	210	159	212	8	2052	100	97	100
(Cyclin_N)_(Cyclin_C);(Pkinase)	1	35	127	39	172	3	1364	99	91	90
(Cyclin_N)_(Cyclin_C);(Pkinase)	2	22	94	39	172	3	620	34	36	56
(GTP_EFTU)_(GTP_EFTU_D2)_(EFG_III)_(EFG_IV)_(EFG_C);(Ribosom _S12_S23)	1	30	34	37	41	4	331	100	0	81
(PsaA_PsaB);(PsaD)	1	57	63	58	69	5	797	100	29	98
(PsaA_PsaB);(PsaD)	2	57	64	58	69	5	701	100	31	98
(PsaA_PsaB);(PsaL)	1	53	60	54	65	21	540	100	28	98
(PsaA_PsaB);(PsaL)	2	44	50	54	65	21	358	100	30	81
(PsaA_PsaB);(PsaM)	1	35	40	36	41	34	961	100	32	97
(PsaA_PsaB);(PSI_8)	1	53	63	54	65	0	743	100	32	98
(PsaA_PsaB);(PSI_PsaE)	1	53	60	57	68	0	394	100	25	93
(PsaA_PsaB);(PSI_PsaE)	2	52	60	57	68	40	280	100	23	91
(PsaA_PsaB);(PSI_PsaF)	1	52	57	54	65	21	946	100	26	96
(PsaA_PsaB);(PSI_PsaF)	2	52	58	54	65	21	1061	100	29	96
(PsaA_PsaB);(PSI_PsaJ)	1	50	57	51	59	21	353	100	32	98
(PsaD);(PsaL)	1	41	48	45	56	5	468	100	33	91
(PsaL);(PSI_8)	1	39	44	44	52	0	259	100	32	89
(PsaM);(PSI_8)	1	27	32	30	35	0	226	100	41	90
(PSI_PsaE);(PSI_PsaF)	1	44	47	46	51	0	259	100	26	96
(PSI_PsaF);(PSI_PsaJ)	1	52	58	54	65	9	703	100	28	96
(Fer4_7);(PsaD)	1	34	39	35	40	2	1418	100	38	97
(Fer4_7);(PSI_PsaE)	1	34	39	35	40	40	536	100	26	97
(PsaA_PsaB);(PSI_PSAK)	1	47	55	50	61	3	630	100	22	94
(Cytochrom_B559);(Cytochrom_B559)_(Cytochrom_B559a)	1	30	70	30	86	7	742	100	37	100
(Cytochrom_B559);(Photo_RC)	1	29	38	30	86	0	451	100	39	97
(Cytochrom_B559)_(Cytochrom_B559a);(Photo_RC)	1	28	38	29	85	62	1294	100	37	97
(Cytochrom_B559)_(Cytochrom_B559a);(Photo_RC)	2	27	41	29	85	62	303	100	44	93
(Photo_RC);(PSII)	1	30	83	30	86	17	1807	100	45	100
(Photo_RC);(PSII)	2	30	75	30	86	6	1851	100	39	100
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_( RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol_ Rpb2_6)_(RNA_pol_Rpb2_7)	1	48	75	56	83	30	8026	100	53	86
(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_1)_(RNA_pol_ Rpb2_2)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_45)_(RNA_pol_Rpb2_6)_ (RNA_pol_Rpb2_7);(RNA_pol_Rpb6)	1	59	76	67	84	26	234	100	8	88
(ATP-synt_A);(ATP-synt_B)	1	38	38	41	49	4	1483	100	3	93
(CoV_NSP7);(CoV_NSP8)	1	51	54	60	64	4	1303	100	22	85
(CoV_NSP7);(CoV_RPol_N)_(RdRP_1)	1	53	53	53	53	11	805	100	15	100
(CoV_NSP8);(CoV_RPol_N)_(RdRP_1)	1	54	54	54	54	13	2432	100	15	100
(CoV_NSP8);(CoV_RPol_N)_(RdRP_1)	2	26	26	54	54	13	825	100	4	48
(HRM)_(7tm_2);(ZapB)_(WD40)_(WD40)_(WD40)_(WD40)_(WD40)_(WD4 0)	1	21	21	35	35	27	294	100	0	60
(Rhv);(VP4_2)	1	20	29	24	34	16	466	97	62	83
(Ribosomal_L16);(Ribosomal_L25p)_(Ribosomal_TL5_C)	1	97	289	98	293	5	1120	100	8	99
(Cullin)_(Cullin_Nedd8);(zf-rbx1)	1	20	20	20	20	20	1960	100	80	100
(LHC);(Photo_RC)	1	21	24	25	28	22	452	100	33	84
(LHC);(Photo_RC)	2	21	24	25	28	22	579	100	33	84
(LHC);(Photo_RC)	3	21	24	25	28	5	312	100	33	84
(Photo_RC);(PRCH)_(PRC)	1	34	166	38	182	35	1618	100	88	89
(Photo_RC);(PRCH)_(PRC)	2	34	166	38	182	35	2701	100	89	89
(MHC_II_alpha)_(C1-set);(V-set)_(C1-set)	1	42	59	52	74	51	303	95	25	81
(MHC_II_beta)_(C1-set);(V-set)_(C1-set)	1	31	41	42	57	51	307	93	34	74
(MHC_II_beta)_(C1-set);(V-set)_(DUF1968)	1	44	49	50	64	10	354	96	29	88
(TFIIA);(TFIIA_gamma_N)_(TFIIA_gamma_C)	1	23	26	23	26	16	2264	100	27	100
(RNA_pol_L_2);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb 1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)	1	72	77	73	78	22	920	100	70	99
(RNA_POL_M_15KD)_(TFIIS_C);(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2) _(RNA_pol_Rpb1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb1_5)	1	62	66	63	67	28	1626	100	68	98
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb4)	1	29	29	30	30	33	663	100	48	97
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb5_N)_(RNA_pol_Rpb5_C)	1	65	69	66	70	28	2391	100	62	98
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb8)	1	65	69	66	70	28	1703	100	62	98
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(SHS2_Rpb7-N)_(RNA_pol_Rbc25)	1	30	30	31	31	44	1270	100	50	97
(RNA_pol_Rpb4);(SHS2_Rpb7-N)_(RNA_pol_Rbc25)	1	32	32	33	33	30	1771	100	53	97
(RNA_pol_Rpb6);(SHS2_Rpb7-N)_(RNA_pol_Rbc25)	1	30	30	31	31	44	427	100	50	97
(DNA_RNApol_7kD);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_ Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_6)_( RNA_pol_Rpb2_7)	1	25	26	26	27	23	946	100	58	96
(RNA_pol_N);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_(RNA_pol_Rpb2_ 1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_Rpb2_6)_(RNA_p ol_Rpb2_7)	1	25	26	26	27	37	1592	100	58	96
(RNA_pol_Rpb1_1)_(RNA_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_ Rpb1_4)_(RNA_pol_Rpb1_5);(RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_2)_( RNA_pol_Rpb2_1)_(RNA_pol_Rpb2_3)_(RNA_pol_Rpb2_4)_(RNA_pol_R pb2_6)_(RNA_pol_Rpb2_7)	1	25	26	26	27	36	8788	100	58	96
(Plug_translocon)_(SecY);(Sec61_beta)	1	45	47	45	47	0	990	96	26	100
(Plug_translocon)_(SecY);(SecE)	1	51	53	52	54	3	1666	96	26	98
(Flavi_glycoprot)_(Flavi_glycop_C);(Flavi_M)	1	50	50	51	51	8	1115	100	2	98
(Flavi_glycoprot)_(Flavi_glycop_C);(Flavi_M)	2	33	33	51	51	2	892	100	0	65
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L);(RNA_pol_L_2)	1	20	21	20	21	23	1819	100	48	100
(Flu_PA);(Flu_PB1)	1	52	64	52	65	3	6438	100	69	100
(Flu_PA);(Flu_PB2)	1	28	38	50	63	21	1918	100	66	56
(Flu_PB1);(Flu_PB2)	1	50	64	50	64	8	5765	100	69	100
(Kunitz_BPTI);(Trypsin)	1	36	97	39	102	0	539	100	97	92
(Hormone_2);(HRM)_(7tm_2)	1	34	34	35	35	4	1595	100	3	97
(Filo_glycop);(TLV_coat)	1	31	50	31	51	12	2470	98	70	100
(Filo_glycop);(TLV_coat)	2	31	50	31	51	12	410	88	68	100
(Filo_glycop);(TLV_coat)	3	31	50	31	51	13	447	88	68	100
(2Fe-2S_thioredx);(Complex1_51K)_(SLBB)_(NADH_4Fe-4S)	1	75	88	75	94	4	2619	100	38	100
(CI-B14_5a);(Complex1_30kDa)	1	48	48	48	48	84	1286	100	10	100
(CI-B14_5a);(Complex1_49kDa)	1	48	48	48	48	84	1491	100	10	100
(CI-B14_5a);(Complex1_51K)_(SLBB)_(NADH_4Fe-4S)	1	42	42	47	47	84	224	100	10	89
(CI-B14_5a);(ETC_C1_NDUFA5)	1	45	45	47	47	83	380	100	9	96
(CI-B14_5a);(Fer4_7)	1	48	48	48	48	84	1004	100	10	100
(CI-B14_5a);(GRIM-19)	1	44	44	47	47	9	479	100	9	94
(CI-B14_5a);(NDUFA12)	1	45	45	47	47	84	501	100	11	96
(Complex1_30kDa);(Complex1_49kDa)	1	86	94	86	94	3	2427	100	29	100
(Complex1_30kDa);(Complex1_LYR)	1	63	63	63	63	17	1042	100	19	100
(Complex1_30kDa);(ETC_C1_NDUFA4)	1	60	60	60	60	29	1336	100	13	100
(Complex1_30kDa);(ETC_C1_NDUFA5)	1	64	64	64	64	2	1429	100	19	100
(Complex1_30kDa);(Fer4_7)	1	61	61	73	81	19	269	100	20	84
(Complex1_30kDa);(Oxidored_q6)	1	81	89	83	91	18	679	100	30	98
(Complex1_49kDa);(dNK)	1	44	44	47	47	78	462	100	7	94
(Complex1_49kDa);(ESSS)	1	27	27	39	39	79	227	100	11	69
(Complex1_49kDa);(ETC_C1_NDUFA5)	1	60	60	63	63	31	428	100	20	95
(Complex1_49kDa);(Fer4_7)	1	85	93	85	93	4	1754	100	29	100
(Complex1_49kDa);(GRIM-19)	1	63	63	63	63	5	934	100	19	100
(Complex1_49kDa);(NADHdh)	1	77	82	80	85	3	1103	100	23	96
(Complex1_49kDa);(Oxidored_q2)	1	29	29	46	46	66	258	100	7	63
(Complex1_49kDa);(Oxidored_q4)	1	58	63	70	75	10	471	100	29	83
(Complex1_49kDa);(Oxidored_q5_N)_(Proton_antipo_M)	1	44	44	48	48	67	312	100	9	92
(Complex1_49kDa);(Oxidored_q6)	1	86	94	86	94	1	1462	100	29	100
(Complex1_49kDa);(Proton_antipo_M)_(NADH_dehy_S2_C)	1	50	50	51	51	54	851	100	14	98
(Complex1_49kDa);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_ C)	1	32	32	52	52	64	379	100	12	62
(Complex1_49kDa);(zf-CHCC)	1	41	41	47	47	25	221	100	12	87
(Complex1_51K)_(SLBB)_(NADH_4Fe-4S);(ETC_C1_NDUFA4)	1	56	56	59	59	29	507	100	14	95
(Complex1_LYR);(ETC_C1_NDUFA4)	1	58	58	58	58	17	665	100	14	100
(Complex1_LYR);(NDUF_B12)	1	53	53	57	57	22	460	100	13	93
(Complex1_LYR);(NDUF_B4)	1	54	54	58	58	61	1315	100	17	93
(Complex1_LYR);(NDUF_B5)	1	49	49	52	52	24	535	100	14	94
(Complex1_LYR);(NDUF_B6)	1	52	52	52	52	25	1020	100	13	100
(Complex1_LYR);(NDUF_B8)	1	50	50	53	53	21	406	100	10	94
(Complex1_LYR);(Oxidored_q5_N)_(Proton_antipo_M)	1	58	58	62	62	22	412	100	17	94
(Complex1_LYR);(PP-binding)	1	76	84	79	87	3	746	100	25	96
(Complex1_LYR);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)	1	62	62	62	62	22	1387	100	18	100
(dNK);(ESSS)	1	45	45	49	49	58	413	100	13	92
(dNK);(NDUF_C2)	1	52	52	52	52	42	383	100	13	100
(dNK);(Proton_antipo_M)_(NADH_dehy_S2_C)	1	53	53	53	53	54	1590	100	13	100
(ESSS);(NDUF_B5)	1	51	51	52	52	24	894	100	14	98
(ESSS);(NDUFB10)	1	52	52	52	52	31	1527	100	13	100
(ESSS);(Oxidored_q5_N)_(Proton_antipo_M)	1	52	52	52	52	5	1594	100	13	100
(ETC_C1_NDUFA4);(Fer4_7)	1	55	55	58	58	30	249	100	13	95
(Fer4_7);(GRIM-19)	1	58	58	62	62	22	359	100	19	94
(Fer4_7);(NADHdh)	1	77	82	78	83	16	715	100	23	99
(Fer4_7);(NADHdh_A3)	1	56	56	60	60	7	329	100	18	93
(Fer4_7);(NDUFA12)	1	62	62	62	62	26	1933	100	19	100
(Fer4_7);(Oxidored_q6)	1	85	93	85	93	1	1280	100	29	100
(Fer4_7);(zf-CHCC)	1	63	63	63	63	25	946	100	17	100
(GRIM-19);(MWFE)	1	61	61	64	64	21	570	100	18	95
(GRIM-19);(NADHdh)	1	65	65	65	65	22	919	100	17	100
(GRIM-19);(NADHdh_A3)	1	56	56	59	59	21	576	100	20	95
(GRIM-19);(Ndufs5)	1	59	59	63	63	22	1259	100	19	94
(GRIM-19);(Oxidored_q3)	1	53	53	64	64	0	729	100	17	83
(MWFE);(NADHdh)	1	65	65	65	65	2	1534	100	17	100
(MWFE);(Oxidored_q3)	1	57	57	60	60	1	294	100	12	95
(NADH_B2);(NDUF_B12)	1	56	56	56	56	21	844	100	11	100
(NADH_B2);(NDUF_B7)	1	54	54	56	56	22	701	100	11	96
(NADH_B2);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)	1	57	57	57	57	21	1450	100	11	100
(NADH_oxidored);(NDUF_B5)	1	50	50	52	52	24	636	100	14	96
(NADH_oxidored);(NDUFB10)	1	45	45	48	48	9	317	100	7	94
(NADH_oxidored);(Oxidored_q5_N)_(Proton_antipo_M)	1	51	51	52	52	67	735	100	14	98
(NADHdh);(NADHdh_A3)	1	65	65	65	65	11	659	100	17	100
(NADHdh);(NDUFA12)	1	31	31	42	42	26	227	100	10	74
(NADHdh);(Oxidored_q3)	1	80	85	83	88	0	1030	100	25	96
(NADHdh);(Oxidored_q4)	1	83	88	83	88	3	2713	100	24	100
(NADHdh);(Oxidored_q6)	1	80	85	80	85	0	1175	100	22	100
(NADHdh_A3);(Oxidored_q4)	1	56	56	64	64	22	343	100	16	88
(NDUF_B12);(PP-binding)	1	54	54	57	57	0	624	100	13	95
(NDUF_B12);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)	1	54	54	57	57	31	808	100	13	95
(NDUF_B4);(NDUF_B8)	1	49	49	54	54	75	1799	100	8	91
(NDUF_B4);(NDUFB10)	1	51	51	54	54	9	381	100	18	94
(NDUF_B4);(Oxidored_q5_N)_(Proton_antipo_M)	1	54	54	62	62	61	1304	100	17	87
(NDUF_B4);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)	1	54	54	61	61	61	870	100	17	89
(NDUF_B5);(NDUF_B6)	1	45	45	48	48	73	254	100	7	94
(NDUF_B5);(NDUF_C2)	1	49	49	52	52	24	682	100	14	94
(NDUF_B5);(NDUFB10)	1	52	52	52	52	9	1080	100	13	100
(NDUF_B5);(Ndufs5)	1	49	49	52	52	70	970	100	8	94
(NDUF_B5);(Oxidored_q5_N)_(Proton_antipo_M)	1	53	53	53	53	24	1176	100	13	100
(NDUF_B5);(Proton_antipo_M)_(NADH_dehy_S2_C)	1	46	46	52	52	54	297	100	9	88
(NDUF_B6);(NDUF_B7)	1	47	47	48	48	69	774	100	6	98
(NDUF_B6);(NDUFB10)	1	48	48	52	52	9	1179	100	6	92
(NDUF_B6);(PP-binding)	1	49	49	52	52	5	525	100	14	94
(NDUF_B6);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)	1	48	48	52	52	64	902	100	6	92
(NDUF_B7);(NDUF_B8)	1	52	52	52	52	21	1325	100	10	100
(NDUF_B7);(NDUFB10)	1	51	51	56	56	9	529	100	12	91
(NDUF_B7);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)	1	57	57	61	61	23	868	100	18	93
(NDUF_B8);(Oxidored_q5_N)_(Proton_antipo_M)	1	50	50	53	53	21	494	100	10	94
(NDUF_B8);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)	1	53	53	53	53	21	1644	100	9	100
(NDUF_C2);(NDUFB10)	1	53	53	53	53	9	707	100	15	100
(NDUF_C2);(Ndufs5)	1	30	30	41	41	70	225	100	7	73
(NDUF_C2);(Oxidored_q5_N)_(Proton_antipo_M)	1	43	43	57	57	67	245	100	9	75
(NDUF_C2);(Proton_antipo_M)_(NADH_dehy_S2_C)	1	53	53	53	53	42	1000	100	13	100
(NDUFA12);(Oxidored_q6)	1	59	59	62	62	26	304	100	20	95
(NDUFA12);(zf-CHCC)	1	53	53	56	56	26	630	100	15	95
(NDUFB10);(Oxidored_q5_N)_(Proton_antipo_M)	1	52	52	61	61	9	747	100	17	85
(NDUFB10);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)	1	52	52	61	61	9	1069	100	17	85
(Ndufs5);(Oxidored_q2)	1	64	64	64	64	22	495	100	17	100
(Ndufs5);(Oxidored_q3)	1	51	51	63	63	51	786	100	18	81
(Ndufs5);(Proton_antipo_M)_(NADH_dehy_S2_C)	1	52	52	52	52	54	876	100	13	100
(Oxidored_q2);(Oxidored_q3)	1	84	89	84	89	0	2816	100	25	100
(Oxidored_q2);(Oxidored_q4)	1	79	84	84	89	1	409	100	26	94
(Oxidored_q2);(Proton_antipo_M)_(NADH_dehy_S2_C)	1	53	53	53	53	6	1625	100	13	100
(Oxidored_q2);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)	1	57	57	61	61	6	489	100	21	93
(Oxidored_q3);(Oxidored_q4)	1	82	87	84	89	0	1805	100	25	98
(Oxidored_q3);(Proton_antipo_M)_(NADH_dehy_S2_C)	1	50	50	53	53	0	753	100	14	94
(Oxidored_q4);(Oxidored_q6)	1	44	49	66	71	24	510	100	27	67
(Oxidored_q5_N)_(Proton_antipo_M);(Proton_antipo_M)_(NADH_de hy_S2_C)	1	53	53	53	53	54	1173	100	13	100
(Oxidored_q5_N)_(Proton_antipo_M);(Proton_antipo_N)_(Proton_ antipo_M)_(NADH5_C)	1	64	64	64	64	28	2222	100	19	100
(Oxidored_q5_N)_(Proton_antipo_M);(Tim17)	1	45	45	57	57	64	219	100	16	79
(PP-binding);(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C)	1	46	46	52	52	0	290	100	15	88
(Proton_antipo_M)_(NADH_dehy_S2_C);(Proton_antipo_N)_(Proton _antipo_M)_(NADH5_C)	1	49	49	53	53	41	971	100	14	92
(Proton_antipo_M)_(NADH_dehy_S2_C);(Tim17)	1	50	50	52	52	54	516	100	14	96
(Proton_antipo_N)_(Proton_antipo_M)_(NADH5_C);(Tim17)	1	48	48	57	57	20	597	100	19	84
(2Fe-2S_thioredx);(NDUFV3)	1	47	47	47	47	70	996	100	11	100
(CHCH);(GRIM-19)	1	58	58	58	58	8	1714	100	14	100
(CHCH);(MWFE)	1	58	58	58	58	8	943	100	14	100
(CHCH);(NADHdh)	1	38	38	51	51	57	258	100	18	75
(CHCH);(NADHdh_A3)	1	51	51	55	55	39	1103	100	14	93
(CHCH);(NDUF_B5)	1	47	47	51	51	24	619	100	13	92
(CHCH);(NDUF_C2)	1	50	50	51	51	42	643	100	14	98
(CHCH);(Ndufs5)	1	48	48	55	55	57	537	100	15	87
(CHCH);(Oxidored_q5_N)_(Proton_antipo_M)	1	44	44	47	47	67	257	100	7	94
(CHCH);(Proton_antipo_M)_(NADH_dehy_S2_C)	1	44	44	47	47	57	258	100	7	94
(Complex1_30kDa);(NmrA)	1	36	36	39	39	82	544	100	6	92
(Complex1_51K)_(SLBB)_(NADH_4Fe-4S);(NDUFV3)	1	47	47	47	47	70	1135	100	11	100
(Complex1_LYR);(NmrA)	1	36	36	39	39	82	382	100	6	92
(dNK);(NADH_dh_m_C1)	1	48	48	51	51	58	584	100	15	94
(ETC_C1_NDUFA4);(NDUFV3)	1	39	39	42	42	70	261	100	10	93
(ETC_C1_NDUFA4);(NmrA)	1	36	36	39	39	82	348	100	6	92
(NADH_dh_m_C1);(NDUF_C2)	1	51	51	51	51	42	853	100	14	100
(NmrA);(Oxidored_q6)	1	36	36	39	39	82	681	100	6	92
(NmrA);(zf-CHCC)	1	36	36	39	39	82	514	100	6	92
(2Fe-2S_thioredx);(Fer2_4)_(NADH-G_4Fe-4S_3)_(Molybdop_Fe4S4 )_(Molybdopterin)_(NADH_dhqG_C)	1	39	39	39	39	46	723	100	8	100
(CI-B14_5a);(Fer2_4)_(NADH-G_4Fe-4S_3)_(Molybdop_Fe4S4)_(Mol ybdopterin)_(NADH_dhqG_C)	1	33	33	36	36	84	493	100	9	92
(Complex1_30kDa);(Fer2_4)_(NADH-G_4Fe-4S_3)_(Molybdop_Fe4S4) _(Molybdopterin)_(NADH_dhqG_C)	1	38	38	39	39	49	682	100	8	97
(Complex1_49kDa);(Fer2_4)_(NADH-G_4Fe-4S_3)_(Molybdop_Fe4S4) _(Molybdopterin)_(NADH_dhqG_C)	1	39	39	39	39	54	865	100	8	100
(Complex1_51K)_(SLBB)_(NADH_4Fe-4S);(Fer2_4)_(NADH-G_4Fe-4S_ 3)_(Molybdop_Fe4S4)_(Molybdopterin)_(NADH_dhqG_C)	1	39	39	39	39	54	1307	100	8	100
(Complex1_LYR);(Fer2_4)_(NADH-G_4Fe-4S_3)_(Molybdop_Fe4S4)_( Molybdopterin)_(NADH_dhqG_C)	1	36	36	39	39	32	569	100	8	92
(ETC_C1_NDUFA4);(Fer2_4)_(NADH-G_4Fe-4S_3)_(Molybdop_Fe4S4)_ (Molybdopterin)_(NADH_dhqG_C)	1	39	39	39	39	38	1954	100	8	100
(Fer2_4)_(NADH-G_4Fe-4S_3)_(Molybdop_Fe4S4)_(Molybdopterin)_ (NADH_dhqG_C);(Fer4_7)	1	37	37	39	39	54	523	100	8	95
(Fer2_4)_(NADH-G_4Fe-4S_3)_(Molybdop_Fe4S4)_(Molybdopterin)_ (NADH_dhqG_C);(L51_S25_CI-B8)	1	39	39	39	39	39	1199	100	8	100
(Fer2_4)_(NADH-G_4Fe-4S_3)_(Molybdop_Fe4S4)_(Molybdopterin)_ (NADH_dhqG_C);(NDUFA12)	1	39	39	39	39	34	664	100	8	100
(Fer2_4)_(NADH-G_4Fe-4S_3)_(Molybdop_Fe4S4)_(Molybdopterin)_ (NADH_dhqG_C);(zf-CHCC)	1	38	38	39	39	31	470	100	8	97
(Ribosomal_L23eN)_(Ribosomal_L23);(Ribosomal_L29)	1	197	210	197	210	0	763	90	12	100
(V-set)_(C1-set);(V-set_2)_(C1-set)	1	282	326	283	330	11	1613	100	87	100
(V-set)_(C1-set);(V-set_2)_(C1-set)	2	24	32	283	330	14	366	0	0	8
(V-set)_(C1-set);(V-set_2)_(C1-set)	3	21	22	283	330	16	360	0	0	7
(Proteasome);(Proteasome)_(Pr_beta_C)	1	90	369	94	473	3	1140	100	74	96
(Proteasome);(Proteasome)_(Pr_beta_C)	2	78	354	94	473	13	1388	100	74	83
(Proteasome);(Proteasome)_(Pr_beta_C)	3	78	292	94	473	13	865	100	72	83
(Proteasome);(Proteasome_A_N)_(Proteasome)	1	117	408	117	506	2	491	100	67	100
(Proteasome);(Proteasome_A_N)_(Proteasome)	2	117	408	117	506	2	427	100	66	100
(Proteasome)_(Pr_beta_C);(Proteasome_A_N)_(Proteasome)	1	94	311	94	473	4	621	100	68	100
(Proteasome)_(Pr_beta_C);(Proteasome_A_N)_(Proteasome)	2	94	369	94	473	8	610	100	71	100
(KOW)_(Ribosomal_L14e);(Ribosomal_L13)	1	165	178	165	178	0	769	88	10	100
(KOW)_(Ribosomal_L14e);(Ribosomal_L18A)	1	169	182	169	182	3	940	88	10	100
(KOW)_(Ribosomal_L14e);(Ribosomal_L6)_(Ribosomal_L6)	1	125	138	126	139	5	463	85	12	99
(KOW)_(Ribosomal_L27e);(Ribosomal_L34e)	1	187	200	189	202	4	664	90	10	99
(KOW)_(Ribosomal_L27e);(Ribosomal_L7Ae)	1	186	199	186	199	3	509	89	10	100
(KOW)_(Ribosomal_L27e);(Ribosomal_L7Ae)	2	139	152	186	199	2	277	86	11	75
(Ribosomal_L13);(Ribosomal_L18A)	1	186	199	186	199	27	692	89	10	100
(Ribosomal_L13);(Ribosomal_L35Ae)	1	145	148	156	169	2	239	93	11	93
(Ribosomal_L13e);(Ribosomal_L15e)	1	188	201	188	201	24	509	90	10	100
(Ribosomal_L13e);(Ribosomal_L18)	1	151	164	158	171	5	234	87	10	96
(Ribosomal_L13e);(Ribosomal_L27A)	1	188	201	188	201	2	1458	90	9	100
(Ribosomal_L13e);(Ribosomal_L29)	1	194	207	194	207	2	909	90	10	100
(Ribosomal_L13e);(Ribosomal_L36e)	1	184	197	184	197	4	642	89	10	100
(Ribosomal_L13e);(Ribosomal_L4)_(Ribos_L4_asso_C)	1	104	104	111	111	31	219	96	7	94
(Ribosomal_L15e);(Ribosomal_L29)	1	190	203	190	203	7	355	90	10	100
(Ribosomal_L15e);(Ribosomal_L36e)	1	189	202	189	202	7	528	90	10	100
(Ribosomal_L15e);(Ribosomal_L4)_(Ribos_L4_asso_C)	1	186	199	188	201	38	268	89	10	99
(Ribosomal_L15e);(Ribosomal_L7Ae)	1	174	247	174	247	2	938	91	9	100
(Ribosomal_L18);(Ribosomal_L27A)	1	190	203	194	207	3	863	90	9	98
(Ribosomal_L18);(Ribosomal_L30_N)_(Ribosomal_L30)	1	170	183	171	184	5	256	89	9	99
(Ribosomal_L18);(Ribosomal_L4)_(Ribos_L4_asso_C)	1	194	207	194	207	0	1113	90	10	100
(Ribosomal_L18A);(Ribosomal_L21e)	1	186	199	186	199	0	889	89	10	100
(Ribosomal_L18A);(Ribosomal_L30_N)_(Ribosomal_L30)	1	191	204	191	204	26	474	90	10	100
(Ribosomal_L18A);(Ribosomal_L6)_(Ribosomal_L6)	1	187	200	190	203	5	310	90	10	98
(Ribosomal_L2)_(Ribosomal_L2_C);(Ribosomal_L37ae)	1	201	273	201	274	0	1253	92	7	100
(Ribosomal_L2)_(Ribosomal_L2_C);(Ribosomal_L7Ae)	1	146	159	146	159	1	299	87	11	100
(Ribosomal_L21e);(Ribosomal_L30_N)_(Ribosomal_L30)	1	187	200	187	200	0	598	90	10	100
(Ribosomal_L21e);(Ribosomal_L5e)_(Ribosomal_L18_c)	1	179	192	179	192	0	858	89	9	100
(Ribosomal_L23eN)_(Ribosomal_L23);(Ribosomal_L39)	1	162	175	170	183	4	222	88	10	95
(Ribosomal_L23eN)_(Ribosomal_L23);(Ribosomal_L7Ae)	1	144	157	146	159	9	373	87	11	99
(Ribosomal_L24e);(Ribosomal_L3)	1	186	199	186	199	0	584	89	11	100
(Ribosomal_L27A);(Ribosomal_L36e)	1	148	161	156	169	4	239	87	9	95
(Ribosomal_L29);(Ribosomal_L37e)	1	50	50	57	57	28	216	100	4	88
(Ribosomal_L30_N)_(Ribosomal_L30);(Ribosomal_L4)_(Ribos_L4_a sso_C)	1	186	199	186	199	11	1004	89	10	100
(Ribosomal_L34e);(Ribosomal_L7Ae)	1	187	200	189	202	4	258	90	10	99
(Ribosomal_L36e);(Ribosomal_L7Ae)	1	155	168	155	168	4	304	88	12	100
(Ribosomal_L37e);(Ribosomal_L39)	1	126	139	134	147	34	226	85	12	94
(Ribosomal_L5)_(Ribosomal_L5_C);(Ribosomal_L5e)_(Ribosomal_L 18_c)	1	173	186	176	189	42	241	89	10	98
(Ribosom_S12_S23);(Ribosomal_S17_N)_(Ribosomal_S17)	1	210	223	210	223	2	467	90	10	100
(Ribosom_S12_S23);(Ribosomal_S30)	1	161	174	162	175	10	445	87	9	99
(Ribosomal_L7Ae);(Ribosomal_S13_N)_(Ribosomal_S15)	1	72	72	87	87	29	354	99	0	83
(Ribosomal_L7Ae);(Ribosomal_S27)	1	72	85	78	91	3	537	75	11	92
(Ribosomal_S11);(Ribosomal_S26e)	1	187	200	187	200	2	1107	89	6	100
(Ribosomal_S11);(Ribosomal_S28e)	1	90	90	103	103	4	289	99	7	87
(Ribosomal_S11);(Ribosomal_S3Ae)	1	231	244	233	246	0	858	91	9	99
(Ribosomal_S13_N)_(Ribosomal_S15);(Ribosomal_S17_N)_(Ribosom al_S17)	1	21	21	22	22	34	252	100	14	95
(Ribosomal_S13_N)_(Ribosomal_S15);(Ribosomal_S27e)	1	229	242	232	245	0	714	91	8	99
(Ribosomal_S13_N)_(Ribosomal_S15);(Ribosomal_S7e)	1	64	64	77	77	2	234	98	12	83
(Ribosomal_S13_N)_(Ribosomal_S15);(Ribosomal_S8)	1	58	60	71	73	66	209	83	12	82
(Ribosomal_S17_N)_(Ribosomal_S17);(Ribosomal_S8e)	1	221	234	221	234	3	720	91	8	100
(Ribosomal_S17e);(Ribosomal_S2)_(40S_SA_C)	1	124	124	124	124	1	1256	99	8	100
(Ribosomal_S2)_(40S_SA_C);(Ribosomal_S21e)	1	126	126	126	126	0	1492	99	8	100
(Ribosomal_S2)_(40S_SA_C);(Ribosomal_S5)_(Ribosomal_S5_C)	1	123	123	123	123	3	530	99	8	100
(Ribosomal_S21e);(Ribosomal_S27e)	1	77	90	78	91	36	426	78	9	99
(Ribosomal_S21e);(Ribosomal_S5)_(Ribosomal_S5_C)	1	201	214	201	214	2	1317	90	8	100
(Ribosomal_S21e);(Ribosomal_S8)	1	174	187	176	189	3	266	88	8	99
(Ribosomal_S24e);(RS4NT)_(S4)_(Ribosomal_S4e)_(KOW)_(40S_S4_ C)	1	213	226	213	226	0	536	91	9	100
(Ribosomal_S24e);(S4)	1	103	116	112	125	30	227	83	11	92
(Ribosomal_S26e);(Ribosomal_S3Ae)	1	126	139	137	150	6	265	84	6	92
(Ribosomal_S27e);(Ribosomal_S7e)	1	74	74	82	82	2	332	97	7	90
(Ribosomal_S27e);(Ribosomal_S8)	1	218	231	218	231	0	477	90	9	100
(Ribosomal_S30);(S4)	1	158	171	158	171	1	506	87	11	100
(Ribosomal_S5)_(Ribosomal_S5_C);(S4)	1	188	201	195	208	4	360	89	9	96
(Ribosomal_S6e);(RS4NT)_(S4)_(Ribosomal_S4e)_(KOW)_(40S_S4_C )	1	193	206	195	208	0	321	90	9	99
(Ribosomal_S7e);(Ribosomal_S8)	1	226	239	226	239	7	470	91	8	100
(RS4NT)_(S4)_(Ribosomal_S4e)_(KOW)_(40S_S4_C);(S4)	1	178	191	178	191	0	368	89	9	100
(Ribosomal_L16);(Ribosomal_L21e)	1	61	74	72	85	4	215	72	7	85
(Ribosomal_L16);(Ribosomal_L5e)_(Ribosomal_L18_c)	1	130	143	137	150	3	260	85	6	95
(Ribosomal_L21e);(Ribosomal_L29e)	1	172	185	172	185	0	477	89	9	100
(Ribosomal_L40e);(Ribosomal_L6)_(Ribosomal_L6)	1	84	97	84	97	32	662	78	9	100
(Ribosomal_L44);(Ribosomal_L5)_(Ribosomal_L5_C)	1	39	39	51	51	57	230	100	15	76
(Ribosomal_L5)_(Ribosomal_L5_C);(Ribosomal_S19)	1	28	41	28	41	59	265	51	5	100
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C)	1	140	168	159	196	4	594	100	62	88
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C)	2	131	157	159	196	3	275	100	63	82
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C)	3	116	127	159	196	3	377	100	65	73
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C)	1	136	164	151	188	4	524	100	63	90
(ATP-synt);(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C)	2	135	162	151	188	12	572	100	63	89
(ATP-synt);(ATP-synt_DE_N)	1	98	99	102	111	2	1444	100	61	96
(ATP-synt_C);(ATP-synt_DE_N)	1	84	84	93	101	2	272	100	67	90
(ATP-synt_C);(ATP-synt_DE_N)	2	73	73	93	101	2	254	100	67	78
(ATP-synt_C);(ATP-synt_DE_N)	3	45	45	93	101	25	222	100	91	48
(ATP-synt);(ATP-synt_Eps)	1	104	115	104	115	10	998	100	74	100
(ATP-synt_A);(ATP-synt_C)	1	77	77	109	117	3	364	100	42	71
(ATP-synt_A);(ATP-synt_C)	2	53	53	109	117	3	607	100	8	49
(ATP-synt_A);(ATP-synt_C)	3	52	52	109	117	3	437	100	10	48
(ATP-synt_A);(ATP-synt_C)	4	38	38	109	117	12	580	100	82	35
(ATP-synt_A);(ATP-synt_C)	5	33	33	109	117	15	494	100	91	30
(ATP-synt_A);(ATP-synt_C)	6	24	24	109	117	15	289	100	17	22
(ATP-synt_DE_N);(ATP-synt_Eps)	1	83	84	83	84	12	1040	100	69	100
(ATP_synt_H);(V_ATPase_I)	1	29	29	29	29	22	1991	100	0	100
(ATP-synt_ab_N)_(ATP-synt_ab);(ATP-synt_ab_N)_(ATP-synt_ab_X tn)_(ATP-synt_ab)	1	24	24	24	24	51	1768	100	0	100
(ATP-synt_ab_N)_(ATP-synt_ab);(ATP-synt_ab_N)_(ATP-synt_ab_X tn)_(ATP-synt_ab)	2	24	24	24	24	51	1090	100	0	100
(ATP-synt_ab_N)_(ATP-synt_ab);(vATP-synt_E)	1	23	23	23	23	34	1256	100	0	100
(ATP-synt_ab_N)_(ATP-synt_ab_Xtn)_(ATP-synt_ab);(ATP-synt_D)	1	30	34	35	42	26	457	100	26	86
(ATP-synt_ab_N)_(ATP-synt_ab_Xtn)_(ATP-synt_ab);(ATP-synt_D)	2	30	34	35	42	26	542	100	29	86
(ATP-synt_ab_N)_(ATP-synt_ab_Xtn)_(ATP-synt_ab);(ATP-synt_D)	3	27	31	35	42	26	323	100	32	77
(ATP-synt_C)_(ATP-synt_C);(ATP-synt_S1)	1	27	27	30	30	23	876	100	0	90
(ATP-synt_C)_(ATP-synt_C);(ATP-synt_S1)	2	27	27	30	30	23	430	100	0	90
(ATP-synt_C)_(ATP-synt_C);(ATP-synt_S1)	3	25	25	30	30	24	600	100	0	83
(ATP-synt_C)_(ATP-synt_C);(V_ATPase_I)	1	27	27	30	30	29	738	100	0	90
(ATP-synt_C)_(ATP-synt_C);(vATP-synt_AC39)	1	35	35	35	35	31	615	100	0	100
(ATP-synt_C)_(ATP-synt_C);(vATP-synt_AC39)	2	30	30	35	35	47	461	100	0	86
(ATP-synt_C)_(ATP-synt_C);(vATP-synt_AC39)	3	29	29	35	35	42	322	100	0	83
(ATP-synt_D);(ATP-synt_F)	1	49	54	50	57	10	1439	100	28	98
(ATP-synt_D);(vATP-synt_AC39)	1	33	33	37	37	12	1125	100	15	89
(ATP-synt_S1);(vATP-synt_AC39)	1	27	27	30	30	23	495	100	0	90
(V-ATPase_G);(vATP-synt_E)	1	36	37	36	37	31	1672	100	5	100
(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C);(ATP-synt_ab_N )_(ATP-synt_ab_Xtn)_(ATP-synt_ab)	1	25	34	25	35	13	2222	97	47	100
(ATP-synt_ab_N)_(ATP-synt_ab)_(T3SS_ATPase_C);(ATP-synt_ab_N )_(ATP-synt_ab_Xtn)_(ATP-synt_ab)	2	25	34	25	35	13	1414	97	44	100
(Ribosomal_L18);(Ribosomal_L28e)	1	85	85	90	90	5	228	99	4	94
(Ribosomal_L28e);(Ribosomal_L32e)	1	88	88	94	94	0	761	99	3	94
(Ribosomal_L28e);(Ribosomal_L4)_(Ribos_L4_asso_C)	1	94	94	94	94	13	940	99	4	100
(Ribosomal_L28e);(Ribosomal_L6e_N)_(Ribosomal_L6e)	1	74	74	75	75	87	500	99	1	99
(Ribosomal_L32e);(Ribosomal_L6e_N)_(Ribosomal_L6e)	1	65	65	68	68	87	227	98	2	96
(Ribosomal_L35Ae);(Ribosomal_L6e_N)_(Ribosomal_L6e)	1	79	79	79	79	41	869	99	1	100
(Ribosomal_L4)_(Ribos_L4_asso_C);(Ribosomal_L6e_N)_(Ribosoma l_L6e)	1	72	72	73	73	44	351	99	1	99
(Chloroa_b-bind);(PsaA_PsaB)	1	22	24	24	27	53	573	100	25	92
(Chloroa_b-bind);(PSI_PsaF)	1	23	25	29	35	41	349	100	20	79
(Fer4_21);(PsaA_PsaB)	1	23	25	23	29	21	403	100	16	100
(Fer4_21);(PsaA_PsaB)	2	23	29	23	29	0	832	100	28	100
(Fer4_21);(PsaD)	1	23	25	23	29	21	1460	100	16	100
(Fer4_21);(PSI_PsaE)	1	23	26	23	29	3	497	100	15	100
(Cytochrom_B559);(PsbJ)	1	27	75	27	82	7	385	100	25	100
(Cytochrom_B559)_(Cytochrom_B559a);(PsbJ)	1	26	68	26	81	0	385	100	26	100
(MSP);(Photo_RC)	1	28	62	28	83	35	707	100	24	100
(MSP);(Photo_RC)	2	27	71	28	83	36	671	100	27	96
(MSP);(PSII)	1	28	62	28	83	35	1313	100	26	100
(MSP);(PSII)	2	25	69	28	83	36	771	100	25	89
(MSP);(PSII)	3	24	67	28	83	39	405	84	6	86
(Photo_RC);(PsbH)	1	30	74	30	85	55	270	100	32	100
(Photo_RC);(PsbI)	1	30	69	30	85	12	868	100	29	100
(Photo_RC);(PsbL)	1	30	74	30	85	68	400	100	23	100
(Photo_RC);(PsbL)	2	27	66	30	85	76	260	100	33	90
(Photo_RC);(PsbT)	1	30	69	30	85	40	512	100	32	100
(Photo_RC);(PsbT)	2	26	69	30	85	40	220	100	25	87
(Photo_RC);(PsbX)	1	29	72	29	84	3	612	100	28	100
(PsbH);(PsbX)	1	28	81	28	83	3	304	100	25	100
(PsbH);(PSII)	1	30	84	30	85	55	1909	100	36	100
(PsbI);(PSII)	1	30	64	30	85	64	445	100	31	100
(PsbK);(PSII)	1	31	74	31	86	17	813	100	32	100
(PsbK);(PSII_Ycf12)	1	21	64	21	76	4	506	100	22	100
(PsbK);(Ycf9)	1	28	73	28	83	6	269	100	21	100
(PsbL);(PsbM)	1	29	84	29	84	4	815	100	37	100
(PsbL);(PsbT)	1	30	85	30	85	12	596	100	38	100
(PsbL);(PSII)	1	30	79	30	85	12	605	100	29	100
(PSII);(Ycf9)	1	29	71	29	84	6	439	100	20	100
(PSII_Ycf12);(Ycf9)	1	21	64	21	76	0	401	100	20	100
(Cytochrom_C550);(PsbU)	1	20	57	20	75	31	650	100	32	100
(MSP);(PsbU)	1	20	56	20	75	31	520	100	25	100
(PsbU);(PSII)	1	20	53	20	75	31	433	100	26	100
(PsbU);(PSII)	2	20	54	20	75	31	469	100	31	100
(RNA_pol_L)_(RNA_pol_A_bac)_(RNA_pol_L);(RNA_pol_Rpb1_1)_(RN A_pol_Rpb1_2)_(RNA_pol_Rpb1_3)_(RNA_pol_Rpb1_4)_(RNA_pol_Rpb 1_5)	1	28	53	39	69	84	925	100	40	72
(IF-2B);(NTP_transferase)_(Hexapep)_(Hexapep)_(W2)	1	25	26	25	26	28	1206	100	31	100
(KOW)_(Ribosomal_L14e);(Ribosomal_L6e_N)_(Ribosomal_L6e)	1	59	59	59	59	41	464	98	0	100
(GP120);(V-set_2)_(C1-set)	1	37	47	86	111	12	970	100	47	43
(Hemagglutinin);(V-set)_(C1-set)	1	34	36	130	153	10	385	92	47	26
(Hemagglutinin);(V-set)_(C1-set)	2	28	30	130	153	10	416	60	20	22
(Lipoprotein_18);(YfiO)	1	36	36	41	42	82	2205	100	78	88
(POTRA)_(POTRA)_(POTRA)_(POTRA)_(POTRA)_(Omp85);(PQQ_2)_(PQQ _3)_(PQQ_3)	1	33	33	38	39	2	1189	100	76	87
(POTRA)_(POTRA)_(POTRA)_(POTRA)_(POTRA)_(Omp85);(YfiO)	1	35	35	40	41	5	1202	100	77	88
(Pico_P1A)_(Rhv);(Rhv)	1	23	28	23	31	7	1801	96	18	100
(RVT_1)_(RVT_thumb)_(RVT_connect);(RVT_1)_(RVT_thumb)_(RVT_c onnect)_(RNase_H)	1	39	309	41	409	11	2555	100	93	95
(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C);(ATP-synt)	1	48	59	54	68	4	572	100	37	89
(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C);(ATP-synt)	2	37	43	54	68	21	390	100	33	69
(ATP-synt_ab_N)_(ATP-synt_ab)_(ATP-synt_ab_C);(ATP-synt)	3	30	41	54	68	21	244	100	46	56
(ATP-synt_ab_N)_(ATP-synt_ab);(ATP-synt)	1	34	34	35	35	21	468	100	6	97
(BOP1NT)_(WD40)_(WD40);(Ribosomal_L36e)	1	21	21	21	21	40	872	100	0	100
(BOP1NT)_(WD40)_(WD40);(Ribosomal_L7Ae)	1	21	21	21	21	40	1374	100	0	100
(NADHdh_A3);(NADHdh)	1	61	61	61	61	21	663	100	11	100
(Proteasome_A_N)_(Proteasome);(Proteasome)	1	25	114	25	114	13	451	100	82	100
(Proteasome_A_N)_(Proteasome);(Proteasome)_(Pr_beta_C)	1	24	111	24	113	14	611	100	82	100
(V-set_2)_(C1-set);(V-set)_(C1-set)	1	22	24	22	24	23	1126	100	42	100